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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G71450
Z-value: 0.91
Transcription factors associated with AT1G71450
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G71450
|
AT1G71450 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G71450 | arTal_v1_Chr1_+_26927012_26927012 | 0.26 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 4.26 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 3.54 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 3.43 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 3.34 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 3.30 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 3.28 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 3.27 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 3.19 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 3.18 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 3.07 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G71450
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 24.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 17.6 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 17.5 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.3 | 15.8 | GO:0009625 | response to insect(GO:0009625) |
| 0.2 | 15.5 | GO:0009615 | response to virus(GO:0009615) |
| 0.1 | 14.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 13.9 | GO:0032446 | protein ubiquitination(GO:0016567) protein modification by small protein conjugation(GO:0032446) |
| 0.2 | 10.3 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 10.0 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 9.6 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 19.6 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 11.1 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 10.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 8.2 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 7.3 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.1 | 6.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 6.5 | GO:0043656 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 6.1 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.0 | 6.1 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 5.6 | GO:0000139 | Golgi membrane(GO:0000139) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 22.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 18.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 15.6 | GO:0061659 | ubiquitin-like protein ligase activity(GO:0061659) |
| 0.1 | 14.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 12.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 12.0 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 10.5 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 7.6 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.4 | 6.7 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.1 | 6.7 | GO:0005096 | GTPase activator activity(GO:0005096) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.6 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.4 | 1.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 1.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 0.5 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.4 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.3 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.1 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.5 | 2.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.3 | 1.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 1.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 1.4 | REACTOME RNA POL II TRANSCRIPTION | Genes involved in RNA Polymerase II Transcription |
| 0.2 | 1.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.2 | 1.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.8 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |