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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G70920
Z-value: 2.49
Transcription factors associated with AT1G70920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G70920
|
AT1G70920 | homeobox-leucine zipper protein 18 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB18 | arTal_v1_Chr1_+_26735894_26735894 | -0.83 | 4.8e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 16.74 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 13.05 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 11.64 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_4008018_4008018 Show fit | 11.15 |
AT3G12610.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr4_+_12660687_12660687 Show fit | 10.32 |
AT4G24510.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr1_-_1043887_1043887 Show fit | 9.47 |
AT1G04040.1
|
HAD superfamily, subfamily IIIB acid phosphatase |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 9.35 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr1_+_26141726_26141836 Show fit | 9.15 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
expansin A1 |
|
| arTal_v1_Chr1_-_4530222_4530222 Show fit | 8.93 |
AT1G13250.1
|
galacturonosyltransferase-like 3 |
|
| arTal_v1_Chr5_+_3889906_3889906 Show fit | 8.86 |
AT5G12050.1
|
rho GTPase-activating protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G70920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 20.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 17.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.9 | 16.8 | GO:0048829 | root cap development(GO:0048829) |
| 0.1 | 14.4 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 14.2 | GO:0009741 | response to brassinosteroid(GO:0009741) |
| 2.3 | 13.6 | GO:0009650 | UV protection(GO:0009650) |
| 0.7 | 13.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 12.4 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.6 | 11.7 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.2 | 10.4 | GO:0010101 | post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.7 | GO:0009507 | chloroplast(GO:0009507) |
| 0.2 | 35.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.2 | 26.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 24.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 20.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 20.0 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 18.1 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.6 | 10.7 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.4 | 9.1 | GO:0009574 | preprophase band(GO:0009574) |
| 1.1 | 8.9 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 20.2 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 20.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.7 | 16.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 16.6 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.3 | 15.3 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.3 | 14.1 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
| 0.1 | 10.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 10.9 | GO:0009055 | electron carrier activity(GO:0009055) |
| 1.3 | 10.8 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.2 | 10.3 | GO:0003993 | acid phosphatase activity(GO:0003993) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 5.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.6 | 3.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.7 | 2.8 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.6 | 1.7 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.8 | 8.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 2.4 | 7.2 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.9 | 2.8 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 1.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.1 | 0.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |