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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G69780
Z-value: 1.07
Transcription factors associated with AT1G69780
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69780
|
AT1G69780 | Homeobox-leucine zipper protein family |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ATHB13 | arTal_v1_Chr1_+_26258788_26258788 | 0.68 | 6.9e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 4.78 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 4.61 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 4.50 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 4.31 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 4.26 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_+_2984829_2984829 Show fit | 3.98 |
AT1G09240.1
|
nicotianamine synthase 3 |
|
| arTal_v1_Chr1_+_23887809_23887809 Show fit | 3.95 |
AT1G64360.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 3.89 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 3.82 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 3.78 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69780
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 48.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 26.3 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.5 | 22.2 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.5 | 21.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.3 | 16.2 | GO:0009626 | plant-type hypersensitive response(GO:0009626) host programmed cell death induced by symbiont(GO:0034050) |
| 0.3 | 13.2 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.2 | 12.9 | GO:0042594 | response to starvation(GO:0042594) |
| 2.5 | 12.3 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.9 | 12.2 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 1.3 | 11.4 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 64.6 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 17.6 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 14.4 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.6 | 11.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 11.4 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 9.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.2 | 8.2 | GO:0005770 | late endosome(GO:0005770) |
| 0.0 | 8.0 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 7.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 7.5 | GO:0000323 | lytic vacuole(GO:0000323) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 27.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 25.3 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.2 | 24.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 23.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 12.6 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.1 | 11.9 | GO:0019900 | kinase binding(GO:0019900) |
| 0.2 | 10.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 10.8 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.2 | 10.4 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
| 0.0 | 10.3 | GO:0020037 | heme binding(GO:0020037) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.5 | 2.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.6 | 1.9 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.5 | 1.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 1.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.2 | 1.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.8 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.8 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.2 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 4.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.6 | 2.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.3 | 2.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.7 | 2.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.4 | 2.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.4 | 1.7 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 1.6 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.3 | 1.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 1.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |