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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G69690

Z-value: 1.01

Transcription factors associated with AT1G69690

Gene Symbol Gene ID Gene Info
AT1G69690 TCP family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TCP15arTal_v1_Chr1_+_26216009_26216009-0.086.8e-01Click!

Activity profile of AT1G69690 motif

Sorted Z-values of AT1G69690 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_5234457 7.81 AT3G15500.1
NAC domain containing protein 3
Chr4_+_6491017 6.67 AT4G10500.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_-_15599951 5.90 AT2G37130.2
Peroxidase superfamily protein
Chr4_+_2224422 5.90 AT4G04460.2
AT4G04460.1
Saposin-like aspartyl protease family protein
Chr2_-_15600154 5.81 AT2G37130.1
Peroxidase superfamily protein
Chr5_+_579744 5.71 AT5G02580.1
AT5G02580.3
AT5G02580.2
argininosuccinate lyase
Chr5_+_5995479 5.61 AT5G18130.2
transmembrane protein
Chr5_+_5995323 5.57 AT5G18130.1
transmembrane protein
Chr5_+_6826365 5.48 AT5G20230.1
blue-copper-binding protein
Chr3_+_23289243 5.41 AT3G63010.1
alpha/beta-Hydrolases superfamily protein
Chr3_-_9595283 5.02 AT3G26210.1
cytochrome P450, family 71, subfamily B, polypeptide 23
Chr2_-_11800928 4.98 AT2G27660.1
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_275002 4.72 AT2G01610.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_10047453 4.66 AT3G27210.1
hypothetical protein
Chr3_-_6788424 4.65 AT3G19550.1
glutamate racemase
Chr2_+_11263889 4.64 AT2G26480.1
UDP-glucosyl transferase 76D1
Chr1_-_28318362 4.63 AT1G75450.1
AT1G75450.2
cytokinin oxidase 5
Chr2_-_17806073 4.55 AT2G42790.1
citrate synthase 3
Chr4_-_6679508 4.37 AT4G10860.1
hypothetical protein
Chr4_+_18530318 4.21 AT4G39955.1
alpha/beta-Hydrolases superfamily protein
Chr1_-_7265445 4.20 AT1G20880.3
AT1G20880.1
AT1G20880.2
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_7086873 4.16 AT1G20440.1
cold-regulated 47
Chr5_+_7138762 4.16 AT5G21020.2
transmembrane protein
Chr4_-_16942060 4.10 AT4G35750.1
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Chr3_+_7964127 3.99 AT3G22460.1
O-acetylserine (thiol) lyase (OAS-TL) isoform A2
Chr1_+_7493213 3.79 AT1G21400.3
AT1G21400.2
AT1G21400.5
AT1G21400.4
AT1G21400.6
AT1G21400.1
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Chr3_+_5243432 3.79 AT3G15510.1
NAC domain containing protein 2
Chr4_+_12741032 3.71 AT4G24690.1
ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
Chr1_+_22198266 3.67 AT1G60190.1
ARM repeat superfamily protein
Chr1_-_19993334 3.62 AT1G53580.2
AT1G53580.1
glyoxalase II 3
Chr2_+_6758430 3.57 AT2G15480.1
UDP-glucosyl transferase 73B5
Chr5_+_21534473 3.56 AT5G53120.6
AT5G53120.1
AT5G53120.2
spermidine synthase 3
Chr3_-_9112748 3.51 AT3G25010.1
receptor like protein 41
Chr1_-_167842 3.50 AT1G01453.2
late embryogenesis abundant hydroxyproline-rich glycoprotein family protein
Chr1_+_21207537 3.46 AT1G56600.1
galactinol synthase 2
Chr3_-_9112936 3.45 AT3G25010.2
receptor like protein 41
Chr1_+_27954129 3.45 AT1G74360.1
Leucine-rich repeat protein kinase family protein
Chr5_+_21534766 3.42 AT5G53120.7
AT5G53120.3
spermidine synthase 3
Chr1_-_2432057 3.35 AT1G07870.2
AT1G07870.1
Protein kinase superfamily protein
Chr4_-_484524 3.31 AT4G01120.1
G-box binding factor 2
Chr1_-_26042741 3.22 AT1G69270.1
receptor-like protein kinase 1
Chr1_-_168088 3.20 AT1G01453.1
late embryogenesis abundant hydroxyproline-rich glycoprotein family protein
Chr2_+_19000180 3.16 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
G-box binding factor 3
Chr5_+_21535260 3.15 AT5G53120.5
spermidine synthase 3
Chr5_-_19422533 3.12 AT5G47960.1
RAB GTPase homolog A4C
Chr5_+_21535059 3.11 AT5G53120.4
spermidine synthase 3
Chr1_-_575085 2.99 AT1G02660.1
alpha/beta-Hydrolases superfamily protein
Chr3_+_8443233 2.99 AT3G23540.3
AT3G23540.1
alpha/beta-Hydrolases superfamily protein
Chr3_-_9119804 2.96 AT3G25020.1
receptor like protein 42
Chr4_+_744804 2.94 AT4G01720.1
WRKY family transcription factor
Chr3_+_7963855 2.92 AT3G22460.2
O-acetylserine (thiol) lyase (OAS-TL) isoform A2
Chr2_+_6758681 2.89 AT2G15480.2
UDP-glucosyl transferase 73B5
Chr5_+_15619691 2.84 AT5G39024.1
AT5G39030.1
AT5G39030.2
hypothetical protein
Protein kinase superfamily protein
Chr3_+_458741 2.82 AT3G02290.5
AT3G02290.6
RING/U-box superfamily protein
Chr1_+_26817878 2.81 AT1G71110.1
transmembrane protein
Chr3_+_458412 2.81 AT3G02290.3
AT3G02290.4
RING/U-box superfamily protein
Chr3_+_19534585 2.79 AT3G52710.1
hypothetical protein
Chr3_+_8444938 2.74 AT3G23540.2
alpha/beta-Hydrolases superfamily protein
Chr4_-_9421857 2.74 AT4G16750.1
Integrase-type DNA-binding superfamily protein
Chr1_-_436922 2.74 AT1G02230.1
NAC domain containing protein 4
Chr5_-_9944942 2.72 AT5G27920.1
F-box family protein
Chr2_+_11443241 2.72 AT2G26830.1
Protein kinase superfamily protein
Chr5_+_25703649 2.69 AT5G64260.1
EXORDIUM like 2
Chr4_-_18459257 2.67 AT4G39780.1
Integrase-type DNA-binding superfamily protein
Chr5_+_4196256 2.65 AT5G13180.1
NAC domain containing protein 83
Chr5_+_25794957 2.59 AT5G64530.1
AT5G64530.2
xylem NAC domain 1
Chr5_-_4132888 2.56 AT5G13020.2
AT5G13020.1
AT5G13020.3
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Chr5_-_7083226 2.56 AT5G20880.1

Chr5_+_19116719 2.54 AT5G47060.1
AT5G47060.2
hypothetical protein (DUF581)
Chr4_-_9834859 2.51 AT4G17670.1
senescence-associated family protein (DUF581)
Chr3_+_6958509 2.51 AT3G19970.1
AT3G19970.2
AT3G19970.3
AT3G19970.5
AT3G19970.4
alpha/beta-Hydrolases superfamily protein
Chr4_+_983970 2.49 AT4G02250.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_6463101 2.49 AT3G18770.1
Autophagy-related protein 13
Chr4_-_11201106 2.48 AT4G20930.2
AT4G20930.1
6-phosphogluconate dehydrogenase family protein
Chr5_-_16622719 2.44 AT5G41560.2
AT5G41560.1
DET1 complexing ubiquitin ligase
Chr3_+_458947 2.43 AT3G02290.2
RING/U-box superfamily protein
Chr3_-_21434648 2.41 AT3G57880.1
AT3G57880.3
AT3G57880.4
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr4_+_12954077 2.41 AT4G25320.1
AT hook motif DNA-binding family protein
Chr3_+_458156 2.33 AT3G02290.1
RING/U-box superfamily protein
Chr4_+_9449114 2.27 AT4G16780.1
homeobox protein 2
Chr4_+_626069 2.24 AT4G01480.1
pyrophosphorylase 5
Chr3_+_2923518 2.24 AT3G09520.1
exocyst subunit exo70 family protein H4
Chr4_-_14776058 2.24 AT4G30190.2
H[+]-ATPase 2
Chr4_+_17305758 2.24 AT4G36710.1
GRAS family transcription factor
Chr4_-_14776247 2.24 AT4G30190.1
H[+]-ATPase 2
Chr5_-_24859272 2.24 AT5G61900.3
AT5G61900.1
Calcium-dependent phospholipid-binding Copine family protein
Chr1_-_23807159 2.22 AT1G64140.1
WRKY transcription factor
Chr1_+_8962087 2.22 AT1G25520.1
Uncharacterized protein family (UPF0016)
Chr1_-_28689208 2.22 AT1G76460.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_+_1172687 2.21 AT3G04420.2
AT3G04420.1
NAC domain containing protein 48
Chr4_-_1140491 2.17 AT4G02590.2
AT4G02590.3
AT4G02590.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_21433954 2.17 AT3G57880.2
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr5_+_23967217 2.16 AT5G59430.2
AT5G59430.4
AT5G59430.3
telomeric repeat binding protein 1
Chr4_+_626220 2.16 AT4G01480.2
pyrophosphorylase 5
Chr1_+_1678881 2.14 AT1G05620.1
uridine-ribohydrolase 2
Chr5_+_661936 2.12 AT5G02880.2
AT5G02880.1
ubiquitin-protein ligase 4
Chr1_+_24848320 2.10 AT1G66600.1
ABA overly sensitive mutant 3
Chr1_+_20637333 2.09 AT1G55325.3
AT1G55325.4
AT1G55325.2
AT1G55325.1
RNA polymerase II transcription mediator
Chr3_-_22990709 2.09 AT3G62090.2
AT3G62090.1
AT3G62090.3
AT3G62090.4
phytochrome interacting factor 3-like 2
Chr5_+_23967875 2.09 AT5G59430.5
telomeric repeat binding protein 1
Chr5_+_23967611 2.08 AT5G59430.1
telomeric repeat binding protein 1
Chr4_+_16413974 2.07 AT4G34310.3
AT4G34310.1
AT4G34310.2
AT4G34310.5
AT4G34310.9
AT4G34310.8
AT4G34310.4
AT4G34310.7
AT4G34310.6
AT4G34310.10
alpha/beta-Hydrolases superfamily protein
Chr1_+_27372197 2.06 AT1G72710.1
casein kinase 1-like protein 2
Chr2_-_10702203 2.04 AT2G25140.1
casein lytic proteinase B4
Chr2_-_6792933 2.03 AT2G15570.2
AT2G15570.1
Thioredoxin superfamily protein
Chr5_-_3595003 2.03 AT5G11260.2
AT5G11260.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr5_-_22764576 2.02 AT5G56240.1
AT5G56240.3
AT5G56240.2
hapless protein
Chr5_+_23546329 2.00 AT5G58190.1
AT5G58190.2
evolutionarily conserved C-terminal region 10
Chr5_+_5178107 2.00 AT5G15853.1
hypothetical protein
Chr1_+_1679406 1.98 AT1G05620.2
uridine-ribohydrolase 2
Chr4_-_13019400 1.98 AT4G25480.1
dehydration response element B1A
Chr4_+_2572621 1.95 AT4G05020.2
NAD(P)H dehydrogenase B2
Chr4_-_11035874 1.94 AT4G20480.1
AT4G20480.2
Putative endonuclease or glycosyl hydrolase
Chr4_+_2572427 1.92 AT4G05020.1
NAD(P)H dehydrogenase B2
Chr1_-_30142697 1.91 AT1G80130.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_1270539 1.90 AT4G02860.1
Phenazine biosynthesis PhzC/PhzF protein
Chr5_+_25113948 1.90 AT5G62570.4
AT5G62570.1
AT5G62570.3
Calmodulin binding protein-like protein
Chr4_-_18049700 1.88 AT4G38600.1
AT4G38600.3
HECT ubiquitin protein ligase family protein KAK
Chr1_-_18945812 1.87 AT1G51140.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_28185504 1.87 AT1G75080.1
AT1G75080.2
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_-_13466097 1.86 AT5G35200.2
AT5G35200.1
ENTH/ANTH/VHS superfamily protein
Chr2_+_19641351 1.84 AT2G48010.1
receptor-like kinase in in flowers 3
Chr4_-_18049252 1.84 AT4G38600.2
HECT ubiquitin protein ligase family protein KAK
Chr5_-_25152541 1.84 AT5G62640.3
AT5G62640.2
AT5G62640.1
proline-rich family protein
Chr3_-_9101837 1.82 AT3G24900.1
receptor like protein 39
Chr1_-_5443911 1.82 AT1G15800.1
hypothetical protein
Chr1_+_6039250 1.79 AT1G17580.1
myosin 1
Chr5_-_22763923 1.79 AT5G56240.4
hapless protein
Chr1_-_29879204 1.78 AT1G79430.1
AT1G79430.2
Homeodomain-like superfamily protein
Chr1_+_24028830 1.78 AT1G64660.1
methionine gamma-lyase
Chr3_-_9101991 1.76 AT3G24900.2
receptor like protein 39
Chr4_+_12594576 1.71 AT4G24290.3
MAC/Perforin domain-containing protein
Chr3_+_1035238 1.69 AT3G04000.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_12594282 1.68 AT4G24290.1
MAC/Perforin domain-containing protein
Chr4_+_12594045 1.67 AT4G24290.2
MAC/Perforin domain-containing protein
Chr3_-_5804210 1.67 AT3G17020.2
AT3G17020.1
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr3_-_22169984 1.67 AT3G60030.1
squamosa promoter-binding protein-like 12
Chr4_+_14990286 1.66 AT4G30780.1
ATP-dependent DNA helicase
Chr2_+_10860668 1.65 AT2G25520.1
Drug/metabolite transporter superfamily protein
Chr5_+_18825100 1.64 AT5G46410.1
AT5G46410.2
AT5G46410.3
SCP1-like small phosphatase 4
Chr1_-_29239484 1.62 AT1G77760.1
nitrate reductase 1
Chr2_+_1717833 1.62 AT2G04880.2
AT2G04880.1
zinc-dependent activator protein-1
Chr1_+_27245082 1.61 AT1G72390.1
AT1G72390.2
nuclear receptor coactivator
Chr2_-_9767 1.60 AT2G01023.1
hypothetical protein
Chr5_+_2743319 1.60 AT5G08480.1
AT5G08480.3
AT5G08480.2
VQ motif-containing protein
Chr5_+_4292704 1.59 AT5G13390.1
AT5G13390.2
no exine formation 1
Chr1_+_29430052 1.59 AT1G78230.1
Outer arm dynein light chain 1 protein
Chr1_-_3658608 1.57 AT1G10940.2
AT1G10940.1
Protein kinase superfamily protein
Chr3_+_2819040 1.57 AT3G09180.2
AT3G09180.1
AT3G09180.3
mediator of RNA polymerase II transcription subunit
Chr5_+_7478860 1.56 AT5G22520.1
hypothetical protein
Chr5_+_25114421 1.55 AT5G62570.2
Calmodulin binding protein-like protein
Chr5_+_23460673 1.53 AT5G57950.2
AT5G57950.1
26S proteasome regulatory subunit
Chr3_-_4834015 1.52 AT3G14440.1
nine-cis-epoxycarotenoid dioxygenase 3
Chr2_+_13033418 1.52 AT2G30590.1
WRKY DNA-binding protein 21
Chr2_-_108803 1.52 AT2G01180.7
AT2G01180.2
AT2G01180.5
AT2G01180.1
AT2G01180.8
AT2G01180.4
AT2G01180.3
phosphatidic acid phosphatase 1
Chr5_+_13103678 1.51 AT5G34853.1

Chr5_-_486434 1.51 AT5G02320.1
AT5G02320.2
myb domain protein 3r-5
Chr3_-_1268350 1.51 AT3G04670.2
AT3G04670.1
WRKY DNA-binding protein 39
Chr3_-_7993588 1.49 AT3G22550.1
NAD(P)H-quinone oxidoreductase subunit, putative (DUF581)
Chr1_-_12466000 1.48 AT1G34220.1
AT1G34220.2
Regulator of Vps4 activity in the MVB pathway protein
Chr5_-_8522679 1.48 AT5G24810.2
AT5G24810.1
ABC1 family protein
Chr1_-_3338084 1.47 AT1G10170.4
AT1G10170.2
AT1G10170.1
NF-X-like 1
Chr1_+_8441073 1.45 AT1G23900.3
AT1G23900.2
AT1G23900.1
gamma-adaptin 1
Chr3_+_4004469 1.45 AT3G12600.1
AT3G12600.2
nudix hydrolase homolog 16
Chr5_-_7255944 1.44 AT5G21950.7
AT5G21950.2
AT5G21950.3
AT5G21950.1
AT5G21950.4
AT5G21950.6
AT5G21950.5
alpha/beta-Hydrolases superfamily protein
Chr5_+_5392755 1.44 AT5G16510.1
Alpha-1,4-glucan-protein synthase family protein
Chr5_-_23318177 1.44 AT5G57580.1
Calmodulin-binding protein
Chr5_-_14816520 1.44 AT5G37370.2
AT5G37370.11
AT5G37370.9
AT5G37370.12
AT5G37370.3
AT5G37370.10
AT5G37370.8
AT5G37370.1
AT5G37370.5
AT5G37370.4
PRP38 family protein
Chr2_-_16680489 1.43 AT2G39950.2
AT2G39950.5
AT2G39950.4
AT2G39950.6
AT2G39950.9
AT2G39950.3
AT2G39950.7
AT2G39950.1
flocculation protein
Chr5_-_19241221 1.43 AT5G47430.6
AT5G47430.5
AT5G47430.2
AT5G47430.3
AT5G47430.4
AT5G47430.1
DWNN domain, a CCHC-type zinc finger
Chr5_+_2616287 1.42 AT5G08139.2
RING/U-box superfamily protein
Chr2_-_15672700 1.42 AT2G37340.3
AT2G37340.2
AT2G37340.1
AT2G37340.4
AT2G37340.6
AT2G37340.5
arginine/serine-rich zinc knuckle-containing protein 33
Chr5_+_5392576 1.42 AT5G16510.2
Alpha-1,4-glucan-protein synthase family protein
Chr5_-_19909452 1.41 AT5G49120.1
DUF581 family protein, putative (DUF581)
Chr3_+_3595694 1.41 AT3G11430.1
glycerol-3-phosphate acyltransferase 5
Chr1_-_130570 1.40 AT1G01320.1
AT1G01320.3
AT1G01320.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_2616134 1.39 AT5G08139.1
RING/U-box superfamily protein
Chr3_+_5183641 1.38 AT3G15355.1
ubiquitin-conjugating enzyme 25
Chr4_-_1088846 1.38 AT4G02480.1
AAA-type ATPase family protein
Chr1_-_21553085 1.37 AT1G58200.1
MSCS-like 3
Chr1_-_867705 1.36 AT1G03470.2
AT1G03470.1
AT1G03470.3
AT1G03470.4
Kinase interacting (KIP1-like) family protein
Chr1_-_3337491 1.36 AT1G10170.3
NF-X-like 1
Chr1_-_21553266 1.35 AT1G58200.2
MSCS-like 3
Chr2_-_19130712 1.32 AT2G46580.1
Pyridoxamine 5'-phosphate oxidase family protein
Chr4_+_16056156 1.32 AT4G33310.1
hypothetical protein
Chr2_+_3618058 1.32 AT2G08986.1
hypothetical protein
Chr3_-_6614107 1.31 AT3G19130.1
RNA-binding protein 47B
Chr3_+_7912905 1.31 AT3G22380.2
AT3G22380.3
AT3G22380.1
time for coffee
Chr5_-_26479577 1.28 AT5G66290.2
AT5G66290.1
AT5G66290.3
hypothetical protein
Chr3_-_2250796 1.27 AT3G07100.1
Sec23/Sec24 protein transport family protein
Chr5_+_23324643 1.27 AT5G57610.1
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein
Chr2_+_9215519 1.26 AT2G21520.2
AT2G21520.1
AT2G21520.3
Sec14p-like phosphatidylinositol transfer family protein
Chr5_+_22388782 1.26 AT5G55180.2
O-Glycosyl hydrolases family 17 protein
Chr1_+_28313379 1.26 AT1G75440.1
ubiquitin-conjugating enzyme 16
Chr1_-_9887478 1.24 AT1G28280.2
AT1G28280.1
VQ motif-containing protein
Chr1_-_8620656 1.22 AT1G24300.3
AT1G24300.1
AT1G24300.2
GYF domain-containing protein
Chr3_+_5731519 1.22 AT3G16830.1
TOPLESS-related 2
Chr5_-_16209927 1.22 AT5G40470.1
RNI-like superfamily protein
Chr5_+_2299725 1.22 AT5G07300.1
Calcium-dependent phospholipid-binding Copine family protein
Chr1_+_2437281 1.21 AT1G07890.1
AT1G07890.6
AT1G07890.2
AT1G07890.5
AT1G07890.7
AT1G07890.4
AT1G07890.8
ascorbate peroxidase 1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G69690

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.9 13.2 GO:0006597 spermine biosynthetic process(GO:0006597)
1.6 7.8 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
1.4 4.1 GO:0046102 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
1.1 3.2 GO:0009945 radial axis specification(GO:0009945)
0.8 5.4 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.8 4.6 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.7 2.1 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.7 3.5 GO:0071277 cellular response to calcium ion(GO:0071277)
0.7 3.3 GO:0010226 response to lithium ion(GO:0010226)
0.6 3.8 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.6 1.2 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.6 1.7 GO:2000045 guard cell fate commitment(GO:0010377) regulation of G1/S transition of mitotic cell cycle(GO:2000045) regulation of genetic imprinting(GO:2000653)
0.6 2.3 GO:0060964 regulation of gene silencing by miRNA(GO:0060964)
0.5 1.4 GO:0071763 nuclear membrane organization(GO:0071763)
0.4 1.8 GO:0019343 cysteine biosynthetic process via cystathionine(GO:0019343)
0.4 6.9 GO:0006535 cysteine biosynthetic process from serine(GO:0006535)
0.4 3.9 GO:0010230 alternative respiration(GO:0010230)
0.4 4.7 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.4 3.6 GO:0070813 hydrogen sulfide metabolic process(GO:0070813)
0.4 1.8 GO:0060151 peroxisome localization(GO:0060151)
0.3 1.6 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.3 4.2 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.3 2.8 GO:0010188 response to microbial phytotoxin(GO:0010188)
0.3 0.9 GO:0071217 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.3 3.8 GO:0048317 seed morphogenesis(GO:0048317)
0.3 2.3 GO:0080190 lateral growth(GO:0080190)
0.3 3.8 GO:1902288 regulation of defense response to oomycetes(GO:1902288)
0.3 1.3 GO:0080119 ER body organization(GO:0080119)
0.2 2.7 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.2 1.0 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.2 0.7 GO:0007098 centrosome cycle(GO:0007098) centriole replication(GO:0007099) centrosome organization(GO:0051297) centrosome duplication(GO:0051298) centriole assembly(GO:0098534)
0.2 0.7 GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.2 1.1 GO:0060919 auxin influx(GO:0060919)
0.2 0.6 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.2 1.0 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.2 1.7 GO:0006168 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.2 0.9 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.2 3.5 GO:0006012 galactose metabolic process(GO:0006012)
0.2 1.1 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.2 1.8 GO:0010088 phloem development(GO:0010088)
0.2 4.3 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.2 0.9 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.2 1.5 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.2 0.8 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.2 1.0 GO:0046085 adenosine metabolic process(GO:0046085)
0.2 0.5 GO:0033120 positive regulation of RNA splicing(GO:0033120) positive regulation of mRNA processing(GO:0050685)
0.2 1.4 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.2 2.9 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.1 0.6 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414) mitochondrial tRNA processing(GO:0090646)
0.1 1.4 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.1 2.0 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 0.5 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.1 2.7 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 3.7 GO:0010091 trichome branching(GO:0010091)
0.1 2.0 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.1 6.9 GO:0009631 cold acclimation(GO:0009631)
0.1 1.3 GO:0034063 stress granule assembly(GO:0034063)
0.1 2.4 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.1 0.3 GO:0018279 peptidyl-asparagine modification(GO:0018196) protein N-linked glycosylation via asparagine(GO:0018279)
0.1 1.5 GO:0006898 receptor-mediated endocytosis(GO:0006898)
0.1 1.5 GO:0043248 proteasome assembly(GO:0043248)
0.1 4.5 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.1 1.4 GO:0006465 signal peptide processing(GO:0006465)
0.1 6.2 GO:0009749 response to glucose(GO:0009749)
0.1 2.7 GO:0042026 protein refolding(GO:0042026)
0.1 0.5 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.1 4.0 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.1 2.4 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.1 1.1 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.1 0.8 GO:0006621 protein retention in ER lumen(GO:0006621)
0.1 0.9 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.1 7.1 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.1 1.4 GO:0046341 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.1 0.9 GO:0000165 MAPK cascade(GO:0000165)
0.1 0.5 GO:0046900 tetrahydrofolylpolyglutamate metabolic process(GO:0046900)
0.1 5.1 GO:0009626 plant-type hypersensitive response(GO:0009626)
0.1 1.2 GO:1900865 chloroplast RNA modification(GO:1900865)
0.1 1.2 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 1.0 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.1 7.1 GO:0010150 leaf senescence(GO:0010150)
0.1 0.2 GO:0072388 FAD biosynthetic process(GO:0006747) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.1 1.6 GO:0007568 aging(GO:0007568)
0.0 0.7 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.7 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 2.9 GO:0051258 protein polymerization(GO:0051258)
0.0 1.6 GO:0080022 primary root development(GO:0080022)
0.0 0.3 GO:0006183 GTP biosynthetic process(GO:0006183)
0.0 1.9 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 2.2 GO:0009567 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.0 3.7 GO:0018105 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 13.4 GO:0006979 response to oxidative stress(GO:0006979)
0.0 0.9 GO:0002237 response to molecule of bacterial origin(GO:0002237)
0.0 1.1 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 2.2 GO:0006887 exocytosis(GO:0006887)
0.0 2.7 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.0 0.7 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.3 GO:0045824 negative regulation of innate immune response(GO:0045824)
0.0 0.2 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 1.9 GO:0090305 nucleic acid phosphodiester bond hydrolysis(GO:0090305)
0.0 2.5 GO:0010029 regulation of seed germination(GO:0010029)
0.0 0.4 GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation(GO:0006616)
0.0 0.3 GO:0080086 stamen filament development(GO:0080086)
0.0 1.8 GO:0009637 response to blue light(GO:0009637)
0.0 1.4 GO:0010017 red or far-red light signaling pathway(GO:0010017) cellular response to red or far red light(GO:0071489)
0.0 0.6 GO:0009789 positive regulation of abscisic acid-activated signaling pathway(GO:0009789)
0.0 0.3 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.6 GO:0009556 microsporogenesis(GO:0009556)
0.0 1.8 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 1.2 GO:0006997 nucleus organization(GO:0006997)
0.0 1.0 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.0 2.1 GO:0009738 abscisic acid-activated signaling pathway(GO:0009738)
0.0 0.5 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 4.3 GO:0006511 ubiquitin-dependent protein catabolic process(GO:0006511) modification-dependent protein catabolic process(GO:0019941)
0.0 0.2 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 2.6 GO:0071456 cellular response to hypoxia(GO:0071456)
0.0 6.8 GO:0016567 protein ubiquitination(GO:0016567)
0.0 1.0 GO:0048573 photoperiodism, flowering(GO:0048573)
0.0 1.6 GO:0006470 protein dephosphorylation(GO:0006470)
0.0 0.4 GO:0006606 protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.9 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.6 3.8 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.4 7.7 GO:0031965 nuclear membrane(GO:0031965)
0.4 2.3 GO:0012510 trans-Golgi network transport vesicle membrane(GO:0012510)
0.2 0.7 GO:0005814 centrosome(GO:0005813) centriole(GO:0005814)
0.2 0.7 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.2 0.6 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.2 1.3 GO:0030127 COPII vesicle coat(GO:0030127)
0.2 3.3 GO:0071011 precatalytic spliceosome(GO:0071011)
0.1 0.9 GO:0005787 signal peptidase complex(GO:0005787)
0.1 0.4 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.1 0.4 GO:0034515 proteasome storage granule(GO:0034515)
0.1 1.4 GO:0034399 nuclear periphery(GO:0034399)
0.1 2.2 GO:0000145 exocyst(GO:0000145)
0.1 3.5 GO:0036464 ribonucleoprotein granule(GO:0035770) cytoplasmic ribonucleoprotein granule(GO:0036464)
0.1 0.7 GO:0032806 holo TFIIH complex(GO:0005675) carboxy-terminal domain protein kinase complex(GO:0032806)
0.1 0.5 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 2.1 GO:0016592 mediator complex(GO:0016592)
0.0 8.7 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.4 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 4.1 GO:0005759 mitochondrial matrix(GO:0005759)
0.0 0.3 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.4 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)
0.0 2.2 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.5 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 0.8 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.0 0.8 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.2 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 1.8 GO:0005681 spliceosomal complex(GO:0005681)
0.0 1.6 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 5.9 GO:0005777 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 2.0 GO:0044217 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 1.7 GO:0005667 transcription factor complex(GO:0005667)
0.0 0.7 GO:0016607 nuclear speck(GO:0016607)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.2 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.0 2.9 GO:0005654 nucleoplasm(GO:0005654)
0.0 3.4 GO:0016021 integral component of membrane(GO:0016021)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.3 11.5 GO:0016768 spermine synthase activity(GO:0016768)
1.8 5.4 GO:0010331 gibberellin binding(GO:0010331)
1.6 6.3 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
1.4 4.1 GO:0050263 uridine nucleosidase activity(GO:0045437) ribosylpyrimidine nucleosidase activity(GO:0050263)
0.9 4.5 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.8 2.4 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.8 3.8 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.7 3.5 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.7 4.6 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.6 6.5 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.5 1.6 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.5 1.5 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.5 3.9 GO:0009916 alternative oxidase activity(GO:0009916)
0.5 2.9 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.5 6.9 GO:0004124 cysteine synthase activity(GO:0004124)
0.4 1.8 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.4 3.5 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.4 1.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.3 1.0 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.3 0.9 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.3 4.4 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.3 1.7 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.2 5.5 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.2 0.7 GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575)
0.2 1.7 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.2 2.5 GO:0070300 phosphatidic acid binding(GO:0070300)
0.2 2.7 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.2 1.4 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 1.0 GO:0030527 structural constituent of chromatin(GO:0030527)
0.1 0.6 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.1 0.6 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.1 1.1 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 2.5 GO:0019902 phosphatase binding(GO:0019902)
0.1 0.5 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.1 2.6 GO:0031491 nucleosome binding(GO:0031491)
0.1 11.0 GO:0004601 peroxidase activity(GO:0004601)
0.1 4.6 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.1 1.7 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.1 1.6 GO:0008420 CTD phosphatase activity(GO:0008420)
0.1 0.5 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.1 0.9 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.1 0.9 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.1 0.5 GO:0019904 protein domain specific binding(GO:0019904)
0.1 1.2 GO:0051879 Hsp90 protein binding(GO:0051879)
0.1 0.4 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.1 2.7 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.8 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.1 1.0 GO:0036442 hydrogen-exporting ATPase activity(GO:0036442)
0.1 2.0 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.1 0.8 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1 4.0 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.1 1.2 GO:0035064 methylated histone binding(GO:0035064)
0.1 1.6 GO:0031386 protein tag(GO:0031386)
0.1 7.8 GO:0046982 protein heterodimerization activity(GO:0046982)
0.1 0.9 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.1 4.1 GO:0043130 ubiquitin binding(GO:0043130)
0.1 0.5 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546)
0.1 0.8 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 1.0 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 22.6 GO:0004842 ubiquitin-protein transferase activity(GO:0004842)
0.1 0.5 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.2 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.7 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 4.3 GO:0019900 kinase binding(GO:0019900)
0.0 0.5 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 2.3 GO:0003678 DNA helicase activity(GO:0003678)
0.0 0.2 GO:0031683 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 1.3 GO:0010181 FMN binding(GO:0010181)
0.0 4.9 GO:0004857 enzyme inhibitor activity(GO:0004857)
0.0 0.6 GO:0051787 misfolded protein binding(GO:0051787)
0.0 0.4 GO:0008536 Ran GTPase binding(GO:0008536)
0.0 2.5 GO:0008047 enzyme activator activity(GO:0008047)
0.0 3.9 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 1.3 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 0.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 2.2 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 3.6 GO:0003924 GTPase activity(GO:0003924)
0.0 1.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 12.8 GO:0016301 kinase activity(GO:0016301)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID SHP2 PATHWAY SHP2 signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.1 0.6 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation
0.0 0.1 REACTOME FRS2 MEDIATED CASCADE Genes involved in FRS2-mediated cascade