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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G69690
Z-value: 1.01
Transcription factors associated with AT1G69690
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69690
|
AT1G69690 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP15 | arTal_v1_Chr1_+_26216009_26216009 | -0.08 | 6.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 7.81 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 6.67 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr2_-_15599951_15599951 Show fit | 5.90 |
AT2G37130.2
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_+_2224422_2224427 Show fit | 5.90 |
AT4G04460.2
AT4G04460.1 |
Saposin-like aspartyl protease family protein |
|
| arTal_v1_Chr2_-_15600154_15600154 Show fit | 5.81 |
AT2G37130.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_579744_579852 Show fit | 5.71 |
AT5G02580.1
AT5G02580.3 AT5G02580.2 |
argininosuccinate lyase |
|
| arTal_v1_Chr5_+_5995479_5995479 Show fit | 5.61 |
AT5G18130.2
|
transmembrane protein |
|
| arTal_v1_Chr5_+_5995323_5995323 Show fit | 5.57 |
AT5G18130.1
|
transmembrane protein |
|
| arTal_v1_Chr5_+_6826365_6826365 Show fit | 5.48 |
AT5G20230.1
|
blue-copper-binding protein |
|
| arTal_v1_Chr3_+_23289243_23289243 Show fit | 5.41 |
AT3G63010.1
|
alpha/beta-Hydrolases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69690
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.4 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 1.9 | 13.2 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 1.6 | 7.8 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 7.1 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.1 | 7.1 | GO:0010150 | leaf senescence(GO:0010150) |
| 0.4 | 6.9 | GO:0006535 | cysteine biosynthetic process from serine(GO:0006535) |
| 0.1 | 6.9 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 6.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 6.2 | GO:0009749 | response to glucose(GO:0009749) |
| 0.8 | 5.4 | GO:0010325 | raffinose family oligosaccharide biosynthetic process(GO:0010325) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.4 | 7.7 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 5.9 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 4.1 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 1.0 | 3.9 | GO:0031314 | extrinsic component of mitochondrial inner membrane(GO:0031314) |
| 0.6 | 3.8 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.1 | 3.5 | GO:0036464 | ribonucleoprotein granule(GO:0035770) cytoplasmic ribonucleoprotein granule(GO:0036464) |
| 0.0 | 3.4 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.2 | 3.3 | GO:0071011 | precatalytic spliceosome(GO:0071011) |
| 0.0 | 2.9 | GO:0005654 | nucleoplasm(GO:0005654) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 22.6 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 12.8 | GO:0016301 | kinase activity(GO:0016301) |
| 2.3 | 11.5 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.1 | 11.0 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 7.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.5 | 6.9 | GO:0004124 | cysteine synthase activity(GO:0004124) |
| 0.6 | 6.5 | GO:0102360 | daphnetin 3-O-glucosyltransferase activity(GO:0102360) |
| 1.6 | 6.3 | GO:0004048 | anthranilate phosphoribosyltransferase activity(GO:0004048) |
| 0.2 | 5.5 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 1.8 | 5.4 | GO:0010331 | gibberellin binding(GO:0010331) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID SHP2 PATHWAY | SHP2 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.9 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.6 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.0 | 0.1 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |