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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G69490
Z-value: 3.88
Transcription factors associated with AT1G69490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69490
|
AT1G69490 | NAC-like, activated by AP3/PI |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAP | arTal_v1_Chr1_+_26122080_26122080 | 0.94 | 7.3e-14 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 30.16 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 28.63 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 25.71 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 25.45 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 24.71 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 24.44 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 23.52 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 22.93 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 22.77 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 22.74 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 11.1 | 55.6 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.6 | 54.6 | GO:0009615 | response to virus(GO:0009615) |
| 1.0 | 42.7 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.2 | 41.3 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 4.5 | 40.3 | GO:0010230 | alternative respiration(GO:0010230) |
| 1.2 | 39.5 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 4.2 | 38.0 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 0.3 | 33.8 | GO:0007568 | aging(GO:0007568) |
| 0.7 | 33.6 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.7 | 33.6 | GO:0002239 | response to oomycetes(GO:0002239) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 430.9 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 86.9 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 84.5 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.2 | 50.5 | GO:0098791 | Golgi subcompartment(GO:0098791) |
| 0.3 | 47.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.3 | 45.8 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.9 | 37.3 | GO:0005764 | lysosome(GO:0005764) |
| 2.4 | 35.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.4 | 35.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.5 | 33.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 112.7 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.7 | 84.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 3.1 | 58.3 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
| 0.4 | 56.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.5 | 55.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 1.5 | 53.1 | GO:0019187 | beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753) |
| 5.0 | 40.3 | GO:0009916 | alternative oxidase activity(GO:0009916) |
| 0.3 | 38.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 5.4 | 38.0 | GO:0016815 | nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061) |
| 0.5 | 37.1 | GO:0016684 | peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.4 | 10.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 2.0 | 5.9 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 1.6 | 4.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 1.4 | 4.1 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.5 | 3.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 1.2 | 1.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.2 | 0.6 | PID IGF1 PATHWAY | IGF1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.3 | 26.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.5 | 17.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.5 | 13.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 1.9 | 11.6 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 2.5 | 9.9 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 1.4 | 5.5 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.8 | 5.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 1.6 | 4.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.8 | 4.0 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.9 | 2.6 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |