GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G69180
|
AT1G69180 | Plant-specific transcription factor YABBY family protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
CRC | arTal_v1_Chr1_-_26009141_26009141 | -0.37 | 5.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr2_-_4312103_4312162 Show fit | 5.23 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
arTal_v1_Chr5_+_9072708_9072727 Show fit | 5.17 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
arTal_v1_Chr5_-_19648362_19648362 Show fit | 4.29 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
arTal_v1_Chr2_-_16950705_16950705 Show fit | 4.25 |
AT2G40610.1
|
expansin A8 |
|
arTal_v1_Chr4_-_17777445_17777445 Show fit | 3.97 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
arTal_v1_Chr1_-_4090857_4090857 Show fit | 3.87 |
AT1G12090.1
|
extensin-like protein |
|
arTal_v1_Chr5_+_8863224_8863224 Show fit | 3.74 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
arTal_v1_Chr5_+_26298728_26298728 Show fit | 3.60 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
arTal_v1_Chr1_-_10475969_10475969 Show fit | 3.51 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
arTal_v1_Chr2_+_2763449_2763513 Show fit | 3.41 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 19.4 | GO:0006949 | syncytium formation(GO:0006949) |
0.2 | 18.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
0.2 | 15.1 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
0.1 | 13.8 | GO:0015979 | photosynthesis(GO:0015979) |
0.6 | 13.2 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
0.2 | 12.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
0.5 | 10.6 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
0.4 | 8.4 | GO:0010207 | photosystem II assembly(GO:0010207) |
0.2 | 7.5 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
0.1 | 7.5 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 83.6 | GO:0005576 | extracellular region(GO:0005576) |
0.2 | 60.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
0.2 | 28.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.1 | 26.4 | GO:0048046 | apoplast(GO:0048046) |
0.1 | 22.5 | GO:0009941 | chloroplast envelope(GO:0009941) |
0.5 | 16.4 | GO:0009523 | photosystem II(GO:0009523) |
0.1 | 12.3 | GO:0022626 | cytosolic ribosome(GO:0022626) |
0.2 | 10.0 | GO:0010319 | stromule(GO:0010319) |
1.0 | 9.2 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
0.1 | 7.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 19.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.2 | 15.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
0.2 | 15.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.7 | 14.1 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
0.6 | 13.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
0.6 | 12.9 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.1 | 10.9 | GO:0008017 | microtubule binding(GO:0008017) |
0.0 | 10.1 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.1 | 10.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.4 | 9.4 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.3 | 3.4 | PID ATR PATHWAY | ATR signaling pathway |
0.2 | 1.5 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.3 | 1.1 | PID BARD1 PATHWAY | BARD1 signaling events |
0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.3 | 0.9 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.1 | 0.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
0.4 | 0.7 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 0.7 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.1 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 2.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.2 | 1.8 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
0.5 | 1.4 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
0.3 | 1.1 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.2 | 1.0 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
0.2 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.1 | 1.0 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
0.3 | 0.9 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
0.1 | 0.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |