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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G65910

Z-value: 1.23

Transcription factors associated with AT1G65910

Gene Symbol Gene ID Gene Info
AT1G65910
AT1G65910 NAC domain containing protein 28

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NAC028arTal_v1_Chr1_-_24524260_245242600.471.1e-02Click!

Activity profile of AT1G65910 motif

Sorted Z-values of AT1G65910 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_10255906 5.66 AT3G27690.2
AT3G27690.1
LHCB2.3
photosystem II light harvesting complex protein 2.3
Chr1_-_4090857 4.68 AT1G12090.1
ELP
extensin-like protein
Chr1_-_29635931 4.66 AT1G78820.1
AT1G78820
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr3_+_5556710 4.07 AT3G16370.1
AT3G16370
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_14577083 4.06 AT2G34620.1
AT2G34620
Mitochondrial transcription termination factor family protein
Chr5_+_4757856 4.03 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
Chr3_+_17228642 3.69 AT3G46780.1
PTAC16
plastid transcriptionally active 16
Chr1_-_10475969 3.68 AT1G29920.1
CAB2
chlorophyll A/B-binding protein 2
Chr4_+_18291218 3.67 AT4G39330.1
AT4G39330.2
CAD9
cinnamyl alcohol dehydrogenase 9
Chr5_+_4758921 3.58 AT5G14740.9
CA2
carbonic anhydrase 2
Chr2_+_16476198 3.55 AT2G39470.1
AT2G39470.2
AT2G39470.3
PnsL1
PsbP-like protein 2
Chr1_+_10371675 3.52 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_-_6999839 3.51 AT1G20190.1
EXPA11
expansin 11
Chr1_+_6409655 3.50 AT1G18620.3
AT1G18620.1
AT1G18620.4
TRM3
LONGIFOLIA protein
Chr5_-_5966785 3.37 AT5G18020.1
SAUR20
SAUR-like auxin-responsive protein family
Chr1_-_25049424 3.33 AT1G67090.2
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr1_-_25049667 3.33 AT1G67090.1
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr4_-_7493080 3.31 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr4_-_176870 3.30 AT4G00400.1
GPAT8
glycerol-3-phosphate acyltransferase 8
Chr1_-_59215 3.30 AT1G01120.1
KCS1
3-ketoacyl-CoA synthase 1
Chr1_-_6999523 3.24 AT1G20190.2
EXPA11
expansin 11
Chr1_+_4001113 3.18 AT1G11860.3
AT1G11860.1
AT1G11860.2
AT1G11860
Glycine cleavage T-protein family
Chr5_-_18026077 3.15 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr2_-_11727654 3.15 AT2G27420.1
AT2G27420
Cysteine proteinases superfamily protein
Chr1_-_27340044 3.11 AT1G72610.1
GER1
germin-like protein 1
Chr2_-_7954680 3.08 AT2G18300.1
AT2G18300.3
AT2G18300.2
HBI1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_17243583 3.06 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
Chr1_-_28423520 3.05 AT1G75690.1
LQY1
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Chr3_-_977474 3.05 AT3G03820.1
SAUR29
SAUR-like auxin-responsive protein family
Chr1_+_6410947 3.05 AT1G18620.5
TRM3
LONGIFOLIA protein
Chr1_+_19454798 3.00 AT1G52230.1
PSAH2
photosystem I subunit H2
Chr1_+_6410033 2.98 AT1G18620.2
TRM3
LONGIFOLIA protein
Chr1_-_4530222 2.98 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr4_+_12660687 2.96 AT4G24510.1
CER2
HXXXD-type acyl-transferase family protein
Chr4_-_12772438 2.93 AT4G24780.1
AT4G24780.2
AT4G24780
Pectin lyase-like superfamily protein
Chr3_+_6180621 2.93 AT3G18050.1
AT3G18050
GPI-anchored protein
Chr5_+_5968352 2.92 AT5G18030.1
AT5G18030
SAUR-like auxin-responsive protein family
Chr1_+_10321011 2.90 AT1G29500.1
AT1G29500
SAUR-like auxin-responsive protein family
Chr1_-_11740399 2.89 AT1G32470.1
AT1G32470
Single hybrid motif superfamily protein
Chr1_+_5489145 2.82 AT1G15980.1
PnsB1
NDH-dependent cyclic electron flow 1
Chr4_+_493546 2.77 AT4G01150.1
AT4G01150.2
AT4G01150
CURVATURE THYLAKOID 1A-like protein
Chr3_+_251868 2.77 AT3G01680.1
SEOR1
sieve element occlusion amino-terminus protein
Chr1_+_10477885 2.77 AT1G29930.1
CAB1
chlorophyll A/B binding protein 1
Chr5_-_17581275 2.75 AT5G43750.1
PnsB5
NAD(P)H dehydrogenase 18
Chr1_-_20803449 2.72 AT1G55670.1
PSAG
photosystem I subunit G
Chr4_-_13398307 2.69 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr5_+_6457026 2.68 AT5G19190.1
AT5G19190
hypothetical protein
Chr1_-_28603932 2.66 AT1G76240.1
AT1G76240
DUF241 domain protein (DUF241)
Chr1_-_29485389 2.62 AT1G78370.1
GSTU20
glutathione S-transferase TAU 20
Chr1_-_23137254 2.61 AT1G62510.1
AT1G62510
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_4171954 2.61 AT5G13140.1
AT5G13140
Pollen Ole e 1 allergen and extensin family protein
Chr5_-_5963405 2.58 AT5G18010.1
SAUR19
SAUR-like auxin-responsive protein family
Chr3_-_5469594 2.56 AT3G16140.1
PSAH-1
photosystem I subunit H-1
Chr3_-_3277930 2.56 AT3G10520.1
HB2
hemoglobin 2
Chr5_+_19825078 2.55 AT5G48900.1
AT5G48900
Pectin lyase-like superfamily protein
Chr1_+_3664187 2.55 AT1G10960.1
FD1
ferredoxin 1
Chr3_+_21076505 2.55 AT3G56940.1
AT3G56940.2
CRD1
dicarboxylate diiron protein, putative (Crd1)
Chr3_+_8586359 2.53 AT3G23805.1
RALFL24
ralf-like 24
Chr4_-_18165740 2.52 AT4G38970.2
FBA2
fructose-bisphosphate aldolase 2
Chr4_-_18166008 2.52 AT4G38970.1
FBA2
fructose-bisphosphate aldolase 2
Chr2_+_19191247 2.52 AT2G46710.1
ROPGAP3
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr3_+_247192 2.52 AT3G01670.2
AT3G01670.1
SEOa
sieve element occlusion protein
Chr4_+_14517393 2.52 AT4G29610.1
AT4G29610
Cytidine/deoxycytidylate deaminase family protein
Chr3_+_22086333 2.51 AT3G59780.1
AT3G59780
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr1_+_2047886 2.51 AT1G06680.2
PSBP-1
photosystem II subunit P-1
Chr1_+_2047634 2.51 AT1G06680.1
PSBP-1
photosystem II subunit P-1
Chr2_+_18286321 2.49 AT2G44230.1
AT2G44230
hypothetical protein (DUF946)
Chr2_-_12173951 2.47 AT2G28470.2
AT2G28470.4
AT2G28470.1
AT2G28470.3
BGAL8
beta-galactosidase 8
Chr1_+_17918207 2.47 AT1G48480.1
RKL1
receptor-like kinase 1
Chr1_-_10306587 2.45 AT1G29450.2
AT1G29450.1
AT1G29450
SAUR-like auxin-responsive protein family
Chr3_-_17495033 2.45 AT3G47470.1
LHCA4
light-harvesting chlorophyll-protein complex I subunit A4
Chr1_+_16871696 2.44 AT1G44575.2
NPQ4
Chlorophyll A-B binding family protein
Chr1_+_16871511 2.44 AT1G44575.3
NPQ4
Chlorophyll A-B binding family protein
Chr4_+_12220641 2.44 AT4G23400.1
PIP1%3B5
plasma membrane intrinsic protein 1;5
Chr3_-_23165387 2.43 AT3G62630.1
AT3G62630
stress response NST1-like protein (DUF1645)
Chr4_+_13725546 2.42 AT4G27440.2
AT4G27440.1
PORB
protochlorophyllide oxidoreductase B
Chr1_+_16870221 2.41 AT1G44575.1
NPQ4
Chlorophyll A-B binding family protein
Chr4_-_8307934 2.40 AT4G14440.1
HCD1
3-hydroxyacyl-CoA dehydratase 1
Chr4_+_12876822 2.38 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr1_+_28428671 2.38 AT1G75710.1
AT1G75710
C2H2-like zinc finger protein
Chr2_+_14427509 2.37 AT2G34170.3
AT2G34170.2
AT2G34170.1
AT2G34170.4
AT2G34170.5
AT2G34170.6
AT2G34170
hypothetical protein (DUF688)
Chr4_+_14149849 2.35 AT4G28660.1
AT4G28660.2
PSB28
photosystem II reaction center PSB28 protein
Chr3_+_188321 2.35 AT3G01480.1
AT3G01480.2
CYP38
cyclophilin 38
Chr5_-_18588792 2.33 AT5G45820.1
CIPK20
CBL-interacting protein kinase 20
Chr4_+_13177356 2.33 AT4G25960.1
ABCB2
P-glycoprotein 2
Chr1_+_29117500 2.33 AT1G77490.1
AT1G77490.2
TAPX
thylakoidal ascorbate peroxidase
Chr3_-_20806333 2.31 AT3G56060.1
AT3G56060
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr3_+_10017321 2.29 AT3G27160.1
AT3G27160.2
GHS1
Ribosomal protein S21 family protein
Chr5_+_25727126 2.28 AT5G64330.1
AT5G64330.2
AT5G64330.3
NPH3
Phototropic-responsive NPH3 family protein
Chr3_-_8589754 2.28 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr1_-_25833966 2.27 AT1G68780.1
AT1G68780
RNI-like superfamily protein
Chr5_-_6842946 2.27 AT5G20270.1
HHP1
heptahelical transmembrane protein1
Chr5_+_2446669 2.26 AT5G07690.1
MYB29
myb domain protein 29
Chr4_+_14192569 2.25 AT4G28720.1
YUC8
Flavin-binding monooxygenase family protein
Chr1_-_21626402 2.24 AT1G58290.1
HEMA1
Glutamyl-tRNA reductase family protein
Chr1_-_6487153 2.24 AT1G18810.1
AT1G18810
phytochrome kinase substrate-like protein
Chr1_-_19101265 2.24 AT1G51500.1
ABCG12
ABC-2 type transporter family protein
Chr3_+_20016837 2.23 AT3G54050.1
AT3G54050.2
HCEF1
high cyclic electron flow 1
Chr1_+_23911024 2.21 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr4_-_5932475 2.21 AT4G09350.1
NdhT
Chaperone DnaJ-domain superfamily protein
Chr4_+_160643 2.19 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr3_+_20709294 2.19 AT3G55800.1
SBPASE
sedoheptulose-bisphosphatase
Chr1_-_10308163 2.18 AT1G29460.1
AT1G29460.2
AT1G29460
SAUR-like auxin-responsive protein family
Chr5_+_18530834 2.17 AT5G45680.1
FKBP13
FK506-binding protein 13
Chr5_+_7168106 2.17 AT5G21100.1
AT5G21100
Plant L-ascorbate oxidase
Chr5_+_15421573 2.16 AT5G38520.2
AT5G38520
alpha/beta-Hydrolases superfamily protein
Chr5_+_15421289 2.15 AT5G38520.1
AT5G38520
alpha/beta-Hydrolases superfamily protein
Chr4_-_17835017 2.14 AT4G37930.1
SHM1
serine transhydroxymethyltransferase 1
Chr1_+_7252111 2.14 AT1G20850.1
XCP2
xylem cysteine peptidase 2
Chr5_+_24667873 2.13 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr4_-_14872267 2.13 AT4G30410.1
AT4G30410.2
AT4G30410
sequence-specific DNA binding transcription factor
Chr1_-_11872926 2.13 AT1G32780.1
AT1G32780
GroES-like zinc-binding dehydrogenase family protein
Chr2_+_1676999 2.12 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr3_+_19845097 2.11 AT3G53530.2
AT3G53530.1
NAKR3
Chloroplast-targeted copper chaperone protein
Chr4_-_16384468 2.10 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr1_+_1231452 2.10 AT1G04520.1
PDLP2
plasmodesmata-located protein 2
Chr5_+_18945543 2.10 AT5G46690.2
AT5G46690.1
bHLH071
beta HLH protein 71
Chr4_-_8350030 2.10 AT4G14550.4
IAA14
indole-3-acetic acid inducible 14
Chr1_-_21614169 2.09 AT1G58270.1
ZW9
TRAF-like family protein
Chr5_+_22175461 2.09 AT5G54585.1
AT5G54585
hypothetical protein
Chr3_-_5271984 2.09 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
Chr2_+_14216771 2.09 AT2G33570.1
GALS1
glycosyltransferase family protein (DUF23)
Chr4_+_8360996 2.09 AT4G14560.1
IAA1
indole-3-acetic acid inducible
Chr2_+_1033598 2.08 AT2G03410.1
AT2G03410
Mo25 family protein
Chr2_+_1676717 2.07 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr1_+_26705420 2.07 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
Chr2_-_13797237 2.07 AT2G32500.2
AT2G32500.1
AT2G32500
Stress responsive alpha-beta barrel domain protein
Chr4_-_2352025 2.06 AT4G04640.1
ATPC1
ATPase, F1 complex, gamma subunit protein
Chr5_+_4974671 2.05 AT5G15310.2
AT5G15310.4
AT5G15310.3
AT5G15310.1
MYB16
myb domain protein 16
Chr1_+_24035941 2.05 AT1G64680.1
AT1G64680.2
AT1G64680
beta-carotene isomerase D27
Chr1_-_18405493 2.04 AT1G49730.3
AT1G49730.4
AT1G49730.2
AT1G49730.5
AT1G49730.1
AT1G49730
Protein kinase superfamily protein
Chr2_+_11550705 2.03 AT2G27060.1
AT2G27060.2
AT2G27060.3
AT2G27060
Leucine-rich repeat protein kinase family protein
Chr4_-_11504739 2.03 AT4G21650.1
AT4G21650
Subtilase family protein
Chr3_-_7187521 2.03 AT3G20570.1
ENODL9
early nodulin-like protein 9
Chr4_-_2673243 2.03 AT4G05180.1
AT4G05180.2
PSBQ-2
photosystem II subunit Q-2
Chr1_-_30041952 2.02 AT1G79850.1
RPS17
ribosomal protein S17
Chr1_+_4868346 2.02 AT1G14250.1
AT1G14250
GDA1/CD39 nucleoside phosphatase family protein
Chr4_-_1230164 2.02 AT4G02770.1
PSAD-1
photosystem I subunit D-1
Chr4_-_9157133 2.02 AT4G16155.1
AT4G16155
dihydrolipoamide dehydrogenase
Chr3_+_5466246 2.02 AT3G16130.1
ROPGEF13
RHO guanyl-nucleotide exchange factor 13
Chr2_+_8063023 2.01 AT2G18570.1
AT2G18570
UDP-Glycosyltransferase superfamily protein
Chr3_-_18628888 2.01 AT3G50240.3
AT3G50240.2
AT3G50240.4
AT3G50240.1
KICP-02
ATP binding microtubule motor family protein
Chr5_+_1130031 1.99 AT5G04140.2
GLU1
glutamate synthase 1
Chr5_+_1129785 1.99 AT5G04140.1
GLU1
glutamate synthase 1
Chr5_-_20940895 1.99 AT5G51550.1
EXL3
EXORDIUM like 3
Chr1_+_24057297 1.98 AT1G64770.1
AT1G64770.2
PnsB2
NDH-dependent cyclic electron flow 1
Chr2_+_9219252 1.98 AT2G21530.1
AT2G21530
SMAD/FHA domain-containing protein
Chr1_-_18690503 1.98 AT1G50450.1
AT1G50450
Saccharopine dehydrogenase
Chr2_-_15797059 1.97 AT2G37660.1
AT2G37660
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_11202728 1.97 AT4G20940.1
GHR1
Leucine-rich receptor-like protein kinase family protein
Chr1_+_10322423 1.96 AT1G29510.1
SAUR68
SAUR-like auxin-responsive protein family
Chr4_+_15583332 1.96 AT4G32280.1
AT4G32280.2
AT4G32280.3
IAA29
indole-3-acetic acid inducible 29
Chr4_-_8454144 1.96 AT4G14740.4
AT4G14740.2
AT4G14740.1
AT4G14740
auxin canalization protein (DUF828)
Chr3_-_4042075 1.95 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr1_+_18935301 1.95 AT1G51110.1
AT1G51110
Plastid-lipid associated protein PAP / fibrillin family protein
Chr3_-_9723904 1.94 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr1_-_24974791 1.93 AT1G66940.2
AT1G66940.4
AT1G66940.1
AT1G66940.3
AT1G66940
kinase-like protein
Chr4_-_8350263 1.92 AT4G14550.1
AT4G14550.2
AT4G14550.3
IAA14
indole-3-acetic acid inducible 14
Chr3_-_10877578 1.91 AT3G28860.1
ABCB19
ATP binding cassette subfamily B19
Chr5_+_23077120 1.91 AT5G57030.1
LUT2
Lycopene beta/epsilon cyclase protein
Chr4_+_18130237 1.91 AT4G38860.1
AT4G38860
SAUR-like auxin-responsive protein family
Chr5_+_16151772 1.91 AT5G40380.3
AT5G40380.2
CRK42
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr4_+_16502747 1.91 AT4G34550.2
AT4G34550
F-box protein
Chr5_+_6387341 1.91 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr1_+_20048434 1.91 AT1G53700.1
WAG1
WAG 1
Chr3_+_4510965 1.90 AT3G13750.1
BGAL1
beta galactosidase 1
Chr1_+_18866197 1.89 AT1G50900.1
GDC1
Ankyrin repeat family protein
Chr5_+_23374873 1.89 AT5G57700.3
AT5G57700.2
AT5G57700.1
AT5G57700.5
AT5G57700
BNR/Asp-box repeat family protein
Chr5_-_18371021 1.89 AT5G45340.2
AT5G45340.1
CYP707A3
cytochrome P450, family 707, subfamily A, polypeptide 3
Chr5_-_26845294 1.88 AT5G67280.1
RLK
receptor-like kinase
Chr2_-_14325205 1.88 AT2G33855.1
AT2G33855
transmembrane protein
Chr4_-_10203469 1.87 AT4G18480.1
CHLI1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_14215473 1.87 AT4G28780.1
AT4G28780
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_-_1169034 1.87 AT1G04360.1
AT1G04360
RING/U-box superfamily protein
Chr5_-_4430901 1.87 AT5G13730.1
SIG4
sigma factor 4
Chr4_+_16502532 1.86 AT4G34550.1
AT4G34550
F-box protein
Chr4_-_14724587 1.86 AT4G30110.2
HMA2
heavy metal atpase 2
Chr2_-_18778374 1.86 AT2G45560.3
AT2G45560.2
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
Chr1_+_24057063 1.85 AT1G64770.3
PnsB2
NDH-dependent cyclic electron flow 1
Chr2_-_18630428 1.85 AT2G45190.2
AFO
Plant-specific transcription factor YABBY family protein
Chr4_+_16591179 1.85 AT4G34770.1
AT4G34770
SAUR-like auxin-responsive protein family
Chr4_-_7353117 1.85 AT4G12420.1
AT4G12420.2
SKU5
Cupredoxin superfamily protein
Chr1_-_12054753 1.84 AT1G33240.1
AT1G33240.3
GTL1
GT-2-like 1
Chr2_-_18630779 1.84 AT2G45190.1
AFO
Plant-specific transcription factor YABBY family protein
Chr1_-_18413016 1.83 AT1G49750.1
AT1G49750
Leucine-rich repeat (LRR) family protein
Chr5_-_21724642 1.83 AT5G53490.3
AT5G53490.2
AT5G53490.1
AT5G53490.4
AT5G53490
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_12053935 1.83 AT1G33240.2
GTL1
GT-2-like 1
Chr4_-_14725311 1.83 AT4G30110.1
HMA2
heavy metal atpase 2
Chr5_-_4582856 1.83 AT5G14210.1
AT5G14210.2
AT5G14210.3
AT5G14210
Leucine-rich repeat protein kinase family protein
Chr1_+_19879405 1.83 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr4_-_16773456 1.83 AT4G35250.1
HCF244
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_8016582 1.82 AT4G13840.1
AT4G13840
HXXXD-type acyl-transferase family protein
Chr4_+_11880080 1.82 AT4G22560.1
AT4G22560
sulfated surface-like glycoprotein
Chr3_+_983057 1.81 AT3G03850.1
SAUR26
SAUR-like auxin-responsive protein family
Chr2_-_18778676 1.80 AT2G45560.1
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
Chr2_-_183639 1.80 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr5_+_24940203 1.80 AT5G62100.2
AT5G62100.4
AT5G62100.3
AT5G62100.5
AT5G62100.6
AT5G62100.1
BAG2
BCL-2-associated athanogene 2
Chr3_+_21109414 1.80 AT3G57040.1
ARR9
response regulator 9
Chr4_+_418327 1.79 AT4G00970.1
AT4G00970.2
CRK41
cysteine-rich RLK (RECEPTOR-like protein kinase) 41
Chr5_-_20779464 1.79 AT5G51110.2
AT5G51110.1
AT5G51110
Transcriptional coactivator/pterin dehydratase

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G65910

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 8.2 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
1.1 5.3 GO:0042550 photosystem I stabilization(GO:0042550)
1.1 9.5 GO:0051513 regulation of monopolar cell growth(GO:0051513)
1.0 3.1 GO:0042353 fucose biosynthetic process(GO:0042353)
0.9 5.7 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
0.9 3.5 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.8 8.7 GO:0010196 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.8 3.8 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.7 3.7 GO:0010450 inflorescence meristem growth(GO:0010450)
0.7 2.2 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.7 3.5 GO:0006106 fumarate metabolic process(GO:0006106)
0.7 2.1 GO:0035017 cuticle pattern formation(GO:0035017)
0.7 2.0 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.7 3.3 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.7 2.0 GO:1903793 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) cellular response to absence of light(GO:0071485) positive regulation of anion channel activity(GO:1901529) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.7 3.3 GO:0031055 chromatin remodeling at centromere(GO:0031055)
0.6 3.2 GO:0042549 photosystem II stabilization(GO:0042549)
0.6 1.3 GO:0090603 sieve element differentiation(GO:0090603)
0.6 2.6 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.6 2.6 GO:0015669 gas transport(GO:0015669)
0.6 1.9 GO:0010541 acropetal auxin transport(GO:0010541)
0.6 4.4 GO:0006000 fructose metabolic process(GO:0006000)
0.6 1.8 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.6 4.1 GO:0010067 procambium histogenesis(GO:0010067)
0.6 2.8 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.6 8.9 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.5 1.6 GO:0071457 cellular response to ozone(GO:0071457)
0.5 1.6 GO:0042817 pyridoxal metabolic process(GO:0042817) pyridine-containing compound catabolic process(GO:0072526)
0.5 1.5 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.5 7.2 GO:0015976 carbon utilization(GO:0015976)
0.5 0.5 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.5 8.4 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.5 2.3 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.5 17.5 GO:0010025 wax biosynthetic process(GO:0010025)
0.5 0.5 GO:0090355 positive regulation of auxin metabolic process(GO:0090355)
0.4 1.8 GO:0070509 calcium ion import(GO:0070509)
0.4 3.0 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.4 3.0 GO:0009803 cinnamic acid metabolic process(GO:0009803)
0.4 2.5 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.4 1.2 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.4 1.2 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.4 4.1 GO:0010088 phloem development(GO:0010088)
0.4 1.6 GO:0090057 root radial pattern formation(GO:0090057)
0.4 2.4 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.4 2.3 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.4 1.1 GO:0033321 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.4 5.2 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.4 3.7 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.4 2.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.4 1.8 GO:0019419 sulfate reduction(GO:0019419)
0.4 2.1 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.4 5.0 GO:0009765 photosynthesis, light harvesting(GO:0009765)
0.4 3.5 GO:0033619 membrane protein proteolysis(GO:0033619)
0.3 1.4 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.3 1.0 GO:0080051 cutin transport(GO:0080051)
0.3 2.7 GO:0080165 callose deposition in phloem sieve plate(GO:0080165)
0.3 1.4 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.3 0.3 GO:0071281 cellular response to iron ion(GO:0071281)
0.3 1.3 GO:0009660 amyloplast organization(GO:0009660)
0.3 1.3 GO:0072502 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.3 17.9 GO:0019684 photosynthesis, light reaction(GO:0019684)
0.3 3.7 GO:0030307 positive regulation of cell growth(GO:0030307)
0.3 1.5 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.3 0.9 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.3 4.5 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.3 7.7 GO:0009638 phototropism(GO:0009638)
0.3 1.5 GO:2000582 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.3 1.2 GO:0098609 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.3 0.9 GO:0046102 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.3 1.5 GO:0010226 response to lithium ion(GO:0010226)
0.3 1.1 GO:0099636 cytoplasmic streaming(GO:0099636)
0.3 1.4 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.3 1.1 GO:0050482 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.3 1.1 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.3 11.1 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.3 8.3 GO:0006284 base-excision repair(GO:0006284)
0.3 0.8 GO:0045793 positive regulation of cell size(GO:0045793)
0.3 4.7 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.3 1.6 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.3 0.8 GO:0019594 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.3 2.6 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.3 0.8 GO:1902458 protein transport by the Tat complex(GO:0043953) positive regulation of stomatal opening(GO:1902458)
0.3 3.9 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.3 5.6 GO:0045493 xylan catabolic process(GO:0045493)
0.3 0.8 GO:0017145 stem cell division(GO:0017145)
0.3 1.3 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.2 0.7 GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.2 0.7 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.2 0.7 GO:0042539 hypotonic salinity response(GO:0042539)
0.2 1.5 GO:0006021 inositol biosynthetic process(GO:0006021)
0.2 3.2 GO:0009641 shade avoidance(GO:0009641)
0.2 2.9 GO:0010021 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.2 0.7 GO:2000104 negative regulation of DNA-dependent DNA replication(GO:2000104)
0.2 2.1 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.2 0.7 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 14.7 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.2 3.0 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.2 0.7 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.2 0.9 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.2 0.9 GO:0006426 glycyl-tRNA aminoacylation(GO:0006426)
0.2 1.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 0.7 GO:0045857 regulation of molecular function, epigenetic(GO:0040030) negative regulation of molecular function, epigenetic(GO:0045857)
0.2 0.4 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.2 0.7 GO:0080190 secondary growth(GO:0080117) lateral growth(GO:0080190)
0.2 4.3 GO:0071668 cell wall assembly(GO:0070726) plant-type cell wall assembly(GO:0071668)
0.2 0.6 GO:0010446 response to alkaline pH(GO:0010446)
0.2 6.0 GO:0045492 xylan biosynthetic process(GO:0045492)
0.2 2.1 GO:1990937 xylan acetylation(GO:1990937)
0.2 3.3 GO:0009299 mRNA transcription(GO:0009299)
0.2 3.0 GO:0055069 zinc ion homeostasis(GO:0055069)
0.2 2.2 GO:0010158 abaxial cell fate specification(GO:0010158)
0.2 1.0 GO:0010359 regulation of anion channel activity(GO:0010359)
0.2 2.8 GO:0009704 de-etiolation(GO:0009704)
0.2 0.6 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.2 7.4 GO:2000030 regulation of response to red or far red light(GO:2000030)
0.2 1.0 GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly(GO:0010258)
0.2 0.6 GO:0036292 DNA rewinding(GO:0036292)
0.2 2.6 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.2 1.7 GO:0009799 specification of symmetry(GO:0009799)
0.2 1.3 GO:2000601 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.2 0.7 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.2 1.1 GO:0048629 trichome patterning(GO:0048629)
0.2 0.4 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.2 1.4 GO:0000967 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.2 3.2 GO:0000373 Group II intron splicing(GO:0000373)
0.2 0.7 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.2 0.5 GO:0043987 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.2 1.6 GO:0042659 regulation of cell fate specification(GO:0042659)
0.2 0.5 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.2 0.2 GO:0051480 regulation of cytosolic calcium ion concentration(GO:0051480)
0.2 0.5 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.2 0.7 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.2 2.0 GO:0032544 plastid translation(GO:0032544)
0.2 10.2 GO:0015979 photosynthesis(GO:0015979)
0.2 0.3 GO:0019368 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.2 1.0 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
0.2 1.0 GO:0080120 CAAX-box protein processing(GO:0071586) CAAX-box protein maturation(GO:0080120)
0.2 1.8 GO:0030497 fatty acid elongation(GO:0030497)
0.2 0.8 GO:0048439 flower morphogenesis(GO:0048439)
0.2 0.6 GO:0030856 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.2 1.3 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.2 2.2 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.2 0.8 GO:0007043 cell-cell junction assembly(GO:0007043)
0.2 9.4 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.2 1.8 GO:0007143 female meiotic division(GO:0007143)
0.1 0.4 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.1 13.0 GO:0045490 pectin catabolic process(GO:0045490)
0.1 1.8 GO:0071483 cellular response to blue light(GO:0071483)
0.1 1.5 GO:0036065 fucosylation(GO:0036065)
0.1 0.7 GO:0046208 spermine catabolic process(GO:0046208)
0.1 1.3 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.1 1.6 GO:0010315 auxin efflux(GO:0010315)
0.1 0.6 GO:0010589 leaf proximal/distal pattern formation(GO:0010589)
0.1 1.4 GO:0070919 production of siRNA involved in chromatin silencing by small RNA(GO:0070919)
0.1 0.4 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.1 0.7 GO:0006788 heme oxidation(GO:0006788)
0.1 3.9 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.1 0.9 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.1 3.8 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.1 2.9 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 0.7 GO:0010338 leaf formation(GO:0010338)
0.1 0.5 GO:0045597 positive regulation of cell differentiation(GO:0045597)
0.1 8.7 GO:0007018 microtubule-based movement(GO:0007018)
0.1 1.2 GO:0030308 negative regulation of cell growth(GO:0030308)
0.1 0.4 GO:1990532 stress response to nickel ion(GO:1990532)
0.1 2.4 GO:0050821 protein stabilization(GO:0050821)
0.1 0.8 GO:0006346 methylation-dependent chromatin silencing(GO:0006346)
0.1 0.5 GO:0034635 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.1 0.4 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.1 1.0 GO:0051214 RNA virus induced gene silencing(GO:0051214)
0.1 1.2 GO:0010262 somatic embryogenesis(GO:0010262)
0.1 1.1 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.1 0.6 GO:0010018 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.1 0.8 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.1 0.5 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.1 1.2 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.1 2.9 GO:0009958 positive gravitropism(GO:0009958)
0.1 0.6 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.1 6.1 GO:0007267 cell-cell signaling(GO:0007267)
0.1 0.8 GO:0009957 epidermal cell fate specification(GO:0009957)
0.1 0.3 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.1 0.4 GO:0046949 fatty-acyl-CoA biosynthetic process(GO:0046949)
0.1 3.1 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.1 0.5 GO:0007142 male meiosis II(GO:0007142)
0.1 0.9 GO:0018344 protein geranylgeranylation(GO:0018344)
0.1 0.3 GO:0033967 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.1 3.4 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.1 0.6 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.1 0.3 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.1 0.4 GO:0009913 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) epithelium development(GO:0060429)
0.1 1.5 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 0.2 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.1 1.3 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 0.6 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.1 1.9 GO:0010218 response to far red light(GO:0010218)
0.1 3.1 GO:0048825 cotyledon development(GO:0048825)
0.1 0.7 GO:0010358 leaf shaping(GO:0010358)
0.1 0.8 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.1 1.3 GO:0033559 unsaturated fatty acid metabolic process(GO:0033559)
0.1 0.8 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 1.5 GO:0016104 triterpenoid biosynthetic process(GO:0016104)
0.1 0.2 GO:0016094 polyprenol biosynthetic process(GO:0016094)
0.1 1.3 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 4.9 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.1 0.6 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.1 2.7 GO:0019761 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.1 0.4 GO:0033386 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.1 0.5 GO:0015689 molybdate ion transport(GO:0015689)
0.1 1.1 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.1 0.5 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.1 0.4 GO:0042391 regulation of membrane potential(GO:0042391)
0.1 0.3 GO:1902475 L-amino acid import(GO:0043092) L-glutamate import(GO:0051938) L-alpha-amino acid transmembrane transport(GO:1902475)
0.1 2.5 GO:0007062 sister chromatid cohesion(GO:0007062)
0.1 0.6 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.1 0.6 GO:0015804 neutral amino acid transport(GO:0015804)
0.1 4.1 GO:0009566 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.1 0.6 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 0.5 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.3 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.1 0.2 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.1 0.6 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.1 0.5 GO:0006308 DNA catabolic process(GO:0006308)
0.1 0.5 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 0.7 GO:0005987 sucrose catabolic process(GO:0005987)
0.1 1.0 GO:0015718 monocarboxylic acid transport(GO:0015718)
0.1 1.9 GO:0009251 glucan catabolic process(GO:0009251)
0.1 0.5 GO:0070828 heterochromatin organization(GO:0070828)
0.1 1.0 GO:0042335 cuticle development(GO:0042335)
0.1 0.6 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.1 0.3 GO:0051103 DNA ligation involved in DNA repair(GO:0051103)
0.0 0.3 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.0 0.4 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.0 0.1 GO:0072388 FAD biosynthetic process(GO:0006747) FAD metabolic process(GO:0046443) flavin adenine dinucleotide metabolic process(GO:0072387) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.0 0.1 GO:0009102 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.0 0.3 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.0 1.3 GO:0009612 response to mechanical stimulus(GO:0009612)
0.0 0.8 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.0 0.5 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 1.1 GO:0010212 response to ionizing radiation(GO:0010212)
0.0 0.4 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.3 GO:0048598 embryonic morphogenesis(GO:0048598)
0.0 0.3 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.2 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.0 1.2 GO:0010027 thylakoid membrane organization(GO:0010027)
0.0 1.9 GO:0035266 meristem growth(GO:0035266)
0.0 0.3 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151)
0.0 0.1 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.0 0.1 GO:0006386 termination of RNA polymerase III transcription(GO:0006386)
0.0 0.2 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.0 0.3 GO:0043410 positive regulation of MAPK cascade(GO:0043410)
0.0 0.2 GO:0071323 cellular response to chitin(GO:0071323)
0.0 1.0 GO:0050918 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.0 0.5 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.0 0.4 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.0 0.5 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.3 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.4 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.7 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.1 GO:0015739 sialic acid transport(GO:0015739)
0.0 0.3 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 1.1 GO:0051510 regulation of unidimensional cell growth(GO:0051510)
0.0 0.5 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.0 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 5.6 GO:0046777 protein autophosphorylation(GO:0046777)
0.0 0.9 GO:0032543 mitochondrial translation(GO:0032543)
0.0 0.4 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.5 GO:0032981 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.0 1.3 GO:0048481 plant ovule development(GO:0048481)
0.0 1.1 GO:0007131 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.0 0.6 GO:0006085 acetyl-CoA biosynthetic process(GO:0006085)
0.0 0.4 GO:0036297 interstrand cross-link repair(GO:0036297)
0.0 0.6 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.1 GO:0042908 xenobiotic transport(GO:0042908)
0.0 0.8 GO:0009960 endosperm development(GO:0009960)
0.0 0.8 GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.0 0.2 GO:0031936 negative regulation of chromatin silencing(GO:0031936)
0.0 0.8 GO:0030705 cytoskeleton-dependent intracellular transport(GO:0030705)
0.0 0.3 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.4 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 0.1 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.0 0.3 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 0.5 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.2 GO:0045903 positive regulation of translational fidelity(GO:0045903)
0.0 0.2 GO:0070734 histone H3-K27 methylation(GO:0070734)
0.0 0.2 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.0 0.3 GO:0006298 mismatch repair(GO:0006298)
0.0 0.2 GO:0045116 protein neddylation(GO:0045116)
0.0 0.2 GO:0051438 regulation of ligase activity(GO:0051340) positive regulation of ligase activity(GO:0051351) regulation of ubiquitin-protein transferase activity(GO:0051438) positive regulation of ubiquitin-protein transferase activity(GO:0051443) regulation of ubiquitin protein ligase activity(GO:1904666) positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.7 GO:0071478 cellular response to radiation(GO:0071478) cellular response to light stimulus(GO:0071482)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.3 GO:0018401 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.1 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 0.6 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.5 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.3 GO:0055075 potassium ion homeostasis(GO:0055075)
0.0 0.3 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.3 GO:0010274 hydrotropism(GO:0010274)
0.0 0.2 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.1 GO:0000973 posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000973)
0.0 1.1 GO:0009664 plant-type cell wall organization(GO:0009664)
0.0 0.2 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.0 0.0 GO:2000757 negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.0 0.1 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.0 0.3 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.0 0.3 GO:0006743 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.7 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.0 0.1 GO:0015780 nucleotide-sugar transport(GO:0015780)
0.0 0.7 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.0 0.4 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.0 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.3 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.0 GO:0030656 regulation of vitamin metabolic process(GO:0030656) regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.0 0.1 GO:0006189 'de novo' IMP biosynthetic process(GO:0006189)
0.0 0.1 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.2 GO:0015850 organic hydroxy compound transport(GO:0015850)
0.0 0.1 GO:0010214 seed coat development(GO:0010214)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 13.0 GO:0009517 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.9 7.6 GO:0009538 photosystem I reaction center(GO:0009538)
0.9 2.7 GO:0030093 chloroplast photosystem I(GO:0030093)
0.8 3.9 GO:0009897 external side of plasma membrane(GO:0009897)
0.6 1.9 GO:0043673 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.6 16.2 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.6 2.9 GO:0005960 glycine cleavage complex(GO:0005960)
0.6 8.9 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.5 2.1 GO:0010330 cellulose synthase complex(GO:0010330)
0.4 1.2 GO:0031390 Ctf18 RFC-like complex(GO:0031390)
0.4 6.6 GO:0009531 secondary cell wall(GO:0009531)
0.4 2.3 GO:0031209 SCAR complex(GO:0031209)
0.4 1.9 GO:0010007 magnesium chelatase complex(GO:0010007)
0.4 1.1 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.3 3.1 GO:0098576 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.3 1.6 GO:0009523 photosystem II(GO:0009523)
0.3 1.6 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.3 1.2 GO:0032807 DNA ligase IV complex(GO:0032807)
0.3 4.5 GO:0009986 cell surface(GO:0009986)
0.3 1.5 GO:0030286 dynein complex(GO:0030286)
0.3 1.7 GO:0009346 citrate lyase complex(GO:0009346)
0.3 1.2 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.3 2.5 GO:0010369 chromocenter(GO:0010369)
0.3 2.2 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.3 12.2 GO:0031977 thylakoid lumen(GO:0031977)
0.3 0.8 GO:0033281 TAT protein transport complex(GO:0033281)
0.3 3.8 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.2 12.4 GO:0010287 plastoglobule(GO:0010287)
0.2 0.7 GO:0009501 amyloplast(GO:0009501)
0.2 2.3 GO:0016272 prefoldin complex(GO:0016272)
0.2 2.1 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.2 0.7 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.2 1.3 GO:0009360 DNA polymerase III complex(GO:0009360)
0.2 60.7 GO:0009534 chloroplast thylakoid(GO:0009534)
0.2 0.8 GO:0032044 DSIF complex(GO:0032044)
0.2 1.3 GO:0035619 root hair tip(GO:0035619)
0.2 2.0 GO:0045298 tubulin complex(GO:0045298)
0.2 3.3 GO:0010319 stromule(GO:0010319)
0.1 0.3 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.1 0.5 GO:0032133 chromosome passenger complex(GO:0032133)
0.1 0.9 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.1 0.9 GO:0031380 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.1 1.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.1 1.8 GO:0016459 myosin complex(GO:0016459)
0.1 27.1 GO:0048046 apoplast(GO:0048046)
0.1 0.7 GO:0031261 DNA replication preinitiation complex(GO:0031261)
0.1 0.6 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.1 1.0 GO:0042555 MCM complex(GO:0042555)
0.1 3.8 GO:0005811 lipid particle(GO:0005811)
0.1 2.0 GO:0016324 apical plasma membrane(GO:0016324)
0.1 1.1 GO:0045281 respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281)
0.1 1.7 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.1 1.1 GO:0000792 heterochromatin(GO:0000792)
0.1 3.4 GO:0005875 microtubule associated complex(GO:0005875)
0.1 2.1 GO:0055028 cortical microtubule(GO:0055028)
0.1 0.9 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.1 9.7 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 0.4 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.1 1.2 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.1 0.8 GO:0000815 ESCRT III complex(GO:0000815)
0.1 0.5 GO:0005784 Sec61 translocon complex(GO:0005784)
0.1 0.3 GO:0000938 GARP complex(GO:0000938)
0.1 1.4 GO:0005686 U2 snRNP(GO:0005686)
0.1 1.0 GO:0000145 exocyst(GO:0000145)
0.0 1.6 GO:1903293 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.5 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 1.0 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.2 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 3.8 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.2 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)
0.0 3.3 GO:0090575 RNA polymerase II transcription factor complex(GO:0090575)
0.0 3.1 GO:0005615 extracellular space(GO:0005615)
0.0 0.5 GO:0051286 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 0.5 GO:0009508 plastid chromosome(GO:0009508)
0.0 0.3 GO:0031428 Cajal body(GO:0015030) box C/D snoRNP complex(GO:0031428)
0.0 3.1 GO:0031969 chloroplast membrane(GO:0031969)
0.0 0.1 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.0 0.1 GO:0030132 clathrin coat of trans-Golgi network vesicle(GO:0030130) clathrin coat of coated pit(GO:0030132)
0.0 0.8 GO:0032040 small-subunit processome(GO:0032040)
0.0 9.6 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.8 GO:0090406 pollen tube(GO:0090406)
0.0 3.0 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.1 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.0 0.1 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.0 GO:0044420 extracellular matrix component(GO:0044420)
0.0 0.3 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 3.8 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.2 GO:0000786 nucleosome(GO:0000786)
0.0 0.1 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.4 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.2 GO:0000419 DNA-directed RNA polymerase V complex(GO:0000419)
0.0 21.9 GO:0005576 extracellular region(GO:0005576)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.4 7.3 GO:0051738 xanthophyll binding(GO:0051738)
1.1 10.2 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
1.1 3.4 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
1.1 6.7 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
1.1 4.4 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
1.1 3.2 GO:0010242 oxygen evolving activity(GO:0010242)
1.0 3.1 GO:0050577 GDP-L-fucose synthase activity(GO:0050577)
1.0 3.1 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.9 2.6 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.9 2.6 GO:0005344 oxygen transporter activity(GO:0005344)
0.8 2.4 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.7 3.0 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.7 3.7 GO:0015434 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.7 2.9 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.7 3.5 GO:0004333 fumarate hydratase activity(GO:0004333)
0.6 1.9 GO:0008883 glutamyl-tRNA reductase activity(GO:0008883)
0.6 14.6 GO:0016168 chlorophyll binding(GO:0016168)
0.6 2.5 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.6 2.5 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.6 3.0 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.6 2.4 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.6 1.7 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.6 6.9 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.5 1.6 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.5 4.6 GO:0009922 fatty acid elongase activity(GO:0009922)
0.5 5.5 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.5 1.8 GO:0033741 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.5 3.2 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.5 1.4 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.4 2.5 GO:0004126 cytidine deaminase activity(GO:0004126)
0.4 3.4 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.4 4.9 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.4 2.0 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.4 1.2 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.4 2.4 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.4 1.6 GO:0070402 NADPH binding(GO:0070402)
0.4 2.4 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.4 2.3 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.4 1.5 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.4 5.2 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.4 1.4 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.3 3.1 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.3 1.4 GO:0015245 fatty acid transporter activity(GO:0015245)
0.3 2.0 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.3 2.7 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.3 0.6 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)
0.3 5.8 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.3 1.9 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.3 1.6 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.3 6.1 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.3 1.5 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.3 0.9 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.3 1.5 GO:0002094 polyprenyltransferase activity(GO:0002094)
0.3 3.3 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.3 1.5 GO:0051959 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.3 2.4 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.3 2.1 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.3 2.6 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.3 1.7 GO:0003878 ATP citrate synthase activity(GO:0003878)
0.3 2.3 GO:0042299 lupeol synthase activity(GO:0042299)
0.3 0.9 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.3 0.9 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.3 2.0 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.3 1.1 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.3 8.0 GO:0008266 poly(U) RNA binding(GO:0008266)
0.3 2.1 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.3 1.6 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.3 3.3 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.3 1.3 GO:0004127 cytidylate kinase activity(GO:0004127)
0.2 0.7 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.2 3.5 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.2 1.5 GO:0003909 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.2 2.2 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.2 1.9 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.2 6.0 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.2 2.9 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.2 2.8 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.2 5.9 GO:0004565 beta-galactosidase activity(GO:0004565)
0.2 1.9 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.2 0.7 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.2 7.2 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.2 2.5 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.2 0.9 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.2 0.9 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.2 1.1 GO:0008430 selenium binding(GO:0008430)
0.2 5.5 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.2 1.7 GO:0009011 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.2 2.9 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.2 2.7 GO:0033170 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.2 0.4 GO:0004651 mRNA guanylyltransferase activity(GO:0004484) polynucleotide 5'-phosphatase activity(GO:0004651) RNA guanylyltransferase activity(GO:0008192)
0.2 0.6 GO:0080102 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.2 2.4 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.2 0.8 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.2 0.6 GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.2 0.6 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.2 0.6 GO:0015925 alpha-galactosidase activity(GO:0004557) galactosidase activity(GO:0015925) raffinose alpha-galactosidase activity(GO:0052692)
0.2 1.3 GO:0071933 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.2 2.0 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.2 1.1 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.2 0.4 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.2 1.8 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.2 0.7 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.2 0.5 GO:0019789 SUMO transferase activity(GO:0019789)
0.2 0.7 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.2 0.2 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.2 1.0 GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.2 0.8 GO:0034511 U3 snoRNA binding(GO:0034511)
0.2 1.3 GO:0008083 growth factor activity(GO:0008083)
0.2 0.5 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
0.2 9.8 GO:0003777 microtubule motor activity(GO:0003777)
0.2 1.1 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.2 0.9 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.2 3.1 GO:0005199 structural constituent of cell wall(GO:0005199)
0.2 1.7 GO:0016161 beta-amylase activity(GO:0016161)
0.2 2.1 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.2 3.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 0.9 GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052658)
0.1 2.5 GO:0070628 proteasome binding(GO:0070628)
0.1 0.7 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 0.6 GO:0030742 GTP-dependent protein binding(GO:0030742)
0.1 0.6 GO:0070006 metalloaminopeptidase activity(GO:0070006)
0.1 1.3 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.1 0.4 GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity(GO:0003848) dihydropteroate synthase activity(GO:0004156)
0.1 0.7 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.1 1.7 GO:0030145 manganese ion binding(GO:0030145)
0.1 1.5 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.1 0.7 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.1 0.7 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.4 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
0.1 0.5 GO:0035175 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.1 1.5 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.1 0.9 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.1 3.8 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.8 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 0.6 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.1 0.3 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.1 0.9 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.1 3.1 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1 0.5 GO:0010296 prenylcysteine methylesterase activity(GO:0010296)
0.1 1.1 GO:0015038 peptide disulfide oxidoreductase activity(GO:0015037) glutathione disulfide oxidoreductase activity(GO:0015038)
0.1 0.4 GO:0045430 chalcone isomerase activity(GO:0045430)
0.1 2.4 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 3.3 GO:0008810 cellulase activity(GO:0008810)
0.1 0.7 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.1 1.0 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.7 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 0.7 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.1 0.8 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.1 0.6 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.1 1.6 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 1.5 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.1 1.1 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.1 0.5 GO:0043765 T/G mismatch-specific endonuclease activity(GO:0043765)
0.1 0.5 GO:0010179 IAA-Ala conjugate hydrolase activity(GO:0010179)
0.1 3.9 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.1 0.6 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 1.1 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 0.4 GO:0019825 oxygen binding(GO:0019825)
0.1 1.2 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.1 0.7 GO:0046592 polyamine oxidase activity(GO:0046592)
0.1 0.3 GO:0036009 protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259)
0.1 6.7 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 0.8 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.5 GO:0036374 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.1 0.3 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.1 1.9 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 0.6 GO:0004312 fatty acid synthase activity(GO:0004312)
0.1 6.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.1 1.0 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.1 0.5 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.1 0.7 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 0.9 GO:0015198 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.1 0.9 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.1 0.6 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.4 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.1 1.1 GO:0046556 alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.6 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.1 0.6 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.1 1.2 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.1 0.5 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.1 1.5 GO:0035250 UDP-galactosyltransferase activity(GO:0035250)
0.1 3.0 GO:0016759 cellulose synthase activity(GO:0016759)
0.1 0.7 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 8.3 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 4.5 GO:0043621 protein self-association(GO:0043621)
0.1 3.0 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 0.5 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 0.5 GO:0016872 intramolecular lyase activity(GO:0016872)
0.1 0.8 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.1 0.9 GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165)
0.1 1.1 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.1 0.4 GO:0043024 ribosomal small subunit binding(GO:0043024)
0.1 0.4 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.1 0.3 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 2.5 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 0.3 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.1 0.2 GO:0004477 methenyltetrahydrofolate cyclohydrolase activity(GO:0004477) methylenetetrahydrofolate dehydrogenase (NADP+) activity(GO:0004488)
0.1 1.0 GO:0003725 double-stranded RNA binding(GO:0003725)
0.1 1.9 GO:0009975 cyclase activity(GO:0009975)
0.1 1.2 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.1 0.2 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.1 0.4 GO:0004310 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
0.1 0.8 GO:0030674 protein binding, bridging(GO:0030674)
0.1 1.8 GO:0048029 monosaccharide binding(GO:0048029)
0.1 0.2 GO:0000213 tRNA-intron endonuclease activity(GO:0000213)
0.1 2.1 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.1 0.3 GO:0019904 protein domain specific binding(GO:0019904)
0.1 0.9 GO:0008144 drug binding(GO:0008144) cyclosporin A binding(GO:0016018)
0.1 0.2 GO:0004046 aminoacylase activity(GO:0004046)
0.1 0.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.1 0.3 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.1 1.2 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.3 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.0 0.4 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 2.7 GO:0004185 serine-type carboxypeptidase activity(GO:0004185) serine-type exopeptidase activity(GO:0070008)
0.0 1.3 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.1 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.2 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.0 0.5 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.5 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.0 0.5 GO:0008199 ferric iron binding(GO:0008199)
0.0 0.1 GO:0035671 enone reductase activity(GO:0035671)
0.0 0.2 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.0 0.2 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.8 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.8 GO:0030276 clathrin binding(GO:0030276)
0.0 0.0 GO:0016971 flavin-linked sulfhydryl oxidase activity(GO:0016971) thiol oxidase activity(GO:0016972)
0.0 1.6 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.3 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.0 0.1 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.1 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 0.5 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 1.2 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.4 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.4 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 6.3 GO:0008134 transcription factor binding(GO:0008134)
0.0 1.6 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.9 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.2 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.5 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.6 GO:0016157 sucrose synthase activity(GO:0016157)
0.0 0.4 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.0 1.3 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.2 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0 4.2 GO:0008168 methyltransferase activity(GO:0008168)
0.0 0.8 GO:0000146 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.2 GO:0043495 protein anchor(GO:0043495)
0.0 0.2 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.1 GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity(GO:0033744) L-methionine-(S)-S-oxide reductase activity(GO:0036456)
0.0 0.1 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 0.2 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.4 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.1 GO:0017091 AU-rich element binding(GO:0017091)
0.0 0.2 GO:0017022 myosin binding(GO:0017022)
0.0 0.3 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.3 GO:0061608 nuclear localization sequence binding(GO:0008139) nuclear import signal receptor activity(GO:0061608)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 1.3 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.2 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.0 3.0 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 0.9 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.0 0.0 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) alanine transmembrane transporter activity(GO:0022858)
0.0 0.5 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 0.1 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.6 GO:0019888 protein phosphatase regulator activity(GO:0019888)
0.0 0.2 GO:0042562 hormone binding(GO:0042562)
0.0 0.6 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.1 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 1.7 GO:0003924 GTPase activity(GO:0003924)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.0 PID AP1 PATHWAY AP-1 transcription factor network
0.2 1.1 PID P53 REGULATION PATHWAY p53 pathway
0.2 1.2 PID IL8 CXCR2 PATHWAY IL8- and CXCR2-mediated signaling events
0.2 0.5 PID HIV NEF PATHWAY HIV-1 Nef: Negative effector of Fas and TNF-alpha
0.1 0.6 PID ERA GENOMIC PATHWAY Validated nuclear estrogen receptor alpha network
0.1 0.7 NABA CORE MATRISOME Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans
0.1 0.3 PID HDAC CLASSI PATHWAY Signaling events mediated by HDAC Class I

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 7.6 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.5 2.4 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.3 1.0 REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK
0.2 1.1 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.2 0.6 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.2 0.5 REACTOME NOD1 2 SIGNALING PATHWAY Genes involved in NOD1/2 Signaling Pathway
0.1 0.6 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.1 2.0 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.1 1.1 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.4 REACTOME PEPTIDE LIGAND BINDING RECEPTORS Genes involved in Peptide ligand-binding receptors
0.0 0.3 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport