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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G65910
Z-value: 1.23
Transcription factors associated with AT1G65910
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G65910
|
AT1G65910 | NAC domain containing protein 28 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC028 | arTal_v1_Chr1_-_24524260_24524260 | 0.47 | 1.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 5.66 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 4.68 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 4.66 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 4.07 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 4.06 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 4.03 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 3.69 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 3.68 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 3.67 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr5_+_4758921_4758921 Show fit | 3.58 |
AT5G14740.9
|
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G65910
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 17.9 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.5 | 17.5 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.2 | 14.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 13.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 11.1 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.2 | 10.2 | GO:0015979 | photosynthesis(GO:0015979) |
| 1.1 | 9.5 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.2 | 9.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.6 | 8.9 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.8 | 8.7 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 60.7 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 27.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 21.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.6 | 16.2 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 1.4 | 13.0 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 12.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.3 | 12.2 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 9.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 9.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.6 | 8.9 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 14.6 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 1.1 | 10.2 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.2 | 9.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 8.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 8.0 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 2.4 | 7.3 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.2 | 7.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.6 | 6.9 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
| 1.1 | 6.7 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.1 | 6.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.2 | 1.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.7 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.6 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.2 | 0.5 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 7.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.5 | 2.4 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 2.0 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 1.1 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 1.0 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.2 | 0.6 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.6 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 0.5 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.0 | 0.4 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |