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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G63030
Z-value: 0.79
Transcription factors associated with AT1G63030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G63030
|
AT1G63030 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ddf2 | arTal_v1_Chr1_-_23368369_23368416 | 0.10 | 6.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 4.12 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr3_+_18940643_18940643 Show fit | 3.60 |
AT3G50970.1
|
dehydrin family protein |
|
| arTal_v1_Chr2_-_11800928_11800928 Show fit | 3.41 |
AT2G27660.1
|
Cysteine/Histidine-rich C1 domain family protein |
|
| arTal_v1_Chr2_+_16298110_16298110 Show fit | 3.38 |
AT2G39030.1
|
Acyl-CoA N-acyltransferases (NAT) superfamily protein |
|
| arTal_v1_Chr1_+_5204312_5204433 Show fit | 3.38 |
AT1G15125.1
AT1G15125.2 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr3_+_9892791_9892791 Show fit | 3.32 |
AT3G26840.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr4_-_16344818_16344818 Show fit | 3.11 |
AT4G34131.1
|
UDP-glucosyl transferase 73B3 |
|
| arTal_v1_Chr2_+_12871984_12872134 Show fit | 2.89 |
AT2G30140.1
AT2G30140.2 |
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr1_-_7086873_7086873 Show fit | 2.56 |
AT1G20440.1
|
cold-regulated 47 |
|
| arTal_v1_Chr1_-_30142697_30142697 Show fit | 2.45 |
AT1G80130.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G63030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.2 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.2 | 5.3 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
| 0.0 | 4.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.8 | 4.1 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.4 | 3.5 | GO:2000068 | regulation of defense response to insect(GO:2000068) |
| 0.0 | 3.5 | GO:0009409 | response to cold(GO:0009409) |
| 0.4 | 3.4 | GO:0006591 | ornithine metabolic process(GO:0006591) |
| 0.0 | 3.4 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.8 | 3.3 | GO:0033306 | phytol metabolic process(GO:0033306) |
| 0.4 | 2.9 | GO:1900425 | negative regulation of defense response to bacterium(GO:1900425) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 3.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 1.9 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.6 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 1.4 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 1.2 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.2 | 1.1 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
| 0.1 | 1.0 | GO:0043189 | NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562) |
| 0.0 | 0.8 | GO:0031358 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
| 0.1 | 0.6 | GO:0031464 | Cul4A-RING E3 ubiquitin ligase complex(GO:0031464) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.3 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
| 0.1 | 4.7 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 3.7 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 3.4 | GO:0008080 | N-acetyltransferase activity(GO:0008080) |
| 0.3 | 3.1 | GO:0010294 | abscisic acid glucosyltransferase activity(GO:0010294) |
| 0.3 | 2.9 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 2.8 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.0 | 2.8 | GO:0019900 | kinase binding(GO:0019900) |
| 0.2 | 2.5 | GO:0004144 | diacylglycerol O-acyltransferase activity(GO:0004144) |
| 0.2 | 2.3 | GO:0015112 | nitrate transmembrane transporter activity(GO:0015112) |