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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G55110
Z-value: 1.31
Transcription factors associated with AT1G55110
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G55110
|
AT1G55110 | indeterminate(ID)-domain 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| IDD7 | arTal_v1_Chr1_-_20563269_20563269 | -0.92 | 5.0e-12 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 5.37 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 4.91 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr4_-_10391298_10391298 Show fit | 4.00 |
AT4G18970.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_10390991_10390991 Show fit | 3.96 |
AT4G18970.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 3.95 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 3.73 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 3.63 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr4_-_12400231_12400231 Show fit | 3.56 |
AT4G23820.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr1_+_20614573_20614610 Show fit | 3.44 |
AT1G55260.1
AT1G55260.2 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_14562863_14562863 Show fit | 3.41 |
AT5G36910.1
|
thionin 2.2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G55110
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 16.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 16.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.7 | 12.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.7 | 11.6 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.4 | 9.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.3 | 8.8 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.3 | 8.4 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.8 | 7.3 | GO:0006168 | adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096) |
| 0.2 | 6.7 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.2 | 6.7 | GO:0009686 | gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 76.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 25.0 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.1 | 22.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 22.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 14.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 14.7 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.3 | 5.5 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.1 | 5.4 | GO:0005874 | microtubule(GO:0005874) |
| 0.2 | 5.1 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.1 | 4.8 | GO:0010319 | stromule(GO:0010319) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.5 | 11.6 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.4 | 9.3 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 8.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 7.9 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.9 | 7.3 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
| 0.6 | 7.3 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.6 | 7.1 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.1 | 7.0 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.3 | 6.5 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.5 | 1.5 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.3 | 1.2 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.1 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.4 | 2.1 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.4 | 1.8 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.4 | 1.5 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.2 | 1.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 1.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.3 | 0.8 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.2 | 0.8 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.1 | 0.8 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.8 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |