Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G54330
Z-value: 1.50
Transcription factors associated with AT1G54330
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G54330
|
AT1G54330 | NAC domain containing protein 20 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC020 | arTal_v1_Chr1_-_20280952_20280952 | -0.08 | 6.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 9.23 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 8.88 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 8.82 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 7.80 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 7.31 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 7.08 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 7.02 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 6.59 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 6.41 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr5_-_15385247_15385320 Show fit | 6.11 |
AT5G38430.2
AT5G38430.1 |
Ribulose bisphosphate carboxylase (small chain) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G54330
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 28.2 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.4 | 27.9 | GO:0015979 | photosynthesis(GO:0015979) |
| 4.2 | 25.1 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 1.2 | 22.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 21.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 16.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.4 | 15.4 | GO:0009958 | positive gravitropism(GO:0009958) |
| 1.7 | 14.9 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 1.2 | 13.7 | GO:1990066 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.2 | 13.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 100.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 42.4 | GO:0005576 | extracellular region(GO:0005576) |
| 1.1 | 27.6 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.4 | 25.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 2.8 | 25.2 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.3 | 23.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 21.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.5 | 19.9 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 15.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 12.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 35.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 27.4 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 24.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 4.0 | 23.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.6 | 15.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 15.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 1.7 | 15.0 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.7 | 15.0 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 4.0 | 12.0 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.4 | 11.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 3.0 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.2 | 1.3 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.2 | 1.1 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.2 | 1.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.0 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.5 | 0.9 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.2 | 0.9 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.1 | 0.5 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.1 | 12.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.7 | 3.7 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.2 | 3.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.8 | 2.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.5 | 2.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.5 | 2.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.5 | 2.0 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.4 | 1.2 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.4 | 1.1 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.1 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |