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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G53170
Z-value: 0.96
Transcription factors associated with AT1G53170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G53170
|
AT1G53170 | ethylene response factor 8 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF8 | arTal_v1_Chr1_-_19822399_19822399 | -0.23 | 2.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_14304921_14304921 Show fit | 2.35 |
AT4G29020.2
AT4G29020.1 |
glycine-rich protein |
|
| arTal_v1_Chr1_+_176141_176141 Show fit | 1.78 |
AT1G01480.2
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_+_175706_175706 Show fit | 1.72 |
AT1G01480.1
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_-_1349478_1349478 Show fit | 1.58 |
AT1G04800.1
|
glycine-rich protein |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 1.56 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 1.53 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_+_27452748_27452766 Show fit | 1.51 |
AT1G72970.1
AT1G72970.2 |
Glucose-methanol-choline (GMC) oxidoreductase family protein |
|
| arTal_v1_Chr3_-_15704152_15704152 Show fit | 1.49 |
AT3G43850.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.48 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.47 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G53170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.7 | GO:0006412 | translation(GO:0006412) |
| 0.2 | 5.9 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.2 | 4.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 3.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.7 | 3.5 | GO:0042218 | 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218) |
| 0.1 | 3.4 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.1 | 3.3 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 3.2 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 3.0 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.3 | 2.9 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 18.0 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 13.0 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 12.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 12.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 9.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 8.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 5.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 4.9 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 4.5 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.5 | 3.8 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 7.7 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.2 | 4.9 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 3.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.3 | 3.5 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.1 | 3.5 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.6 | 3.2 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
| 0.2 | 3.2 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 3.1 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.1 | 2.8 | GO:0003899 | DNA-directed RNA polymerase activity(GO:0003899) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.6 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.6 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.1 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.1 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.9 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 3.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 1.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 1.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.5 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.3 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |