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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G51700
Z-value: 0.97
Transcription factors associated with AT1G51700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G51700
|
AT1G51700 | DOF zinc finger protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF1 | arTal_v1_Chr1_+_19173880_19173880 | 0.26 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 4.68 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 4.48 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.45 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 4.16 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 3.92 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 3.90 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 3.87 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 3.84 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 3.78 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 3.76 |
AT3G01500.4
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G51700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 17.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 1.3 | 16.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.2 | 15.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.6 | 10.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 10.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 10.3 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.2 | 9.8 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.5 | 8.1 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.8 | 7.5 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 0.3 | 7.1 | GO:0043572 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 78.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 70.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 51.7 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.2 | 31.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 26.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.5 | 20.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 12.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 11.5 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.2 | 9.5 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 1.1 | 8.9 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 25.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.3 | 18.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 16.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.5 | 11.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.5 | 9.6 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.4 | 9.3 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.4 | 9.2 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.2 | 9.1 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.1 | 9.1 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 9.0 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 14.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.5 | 3.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.7 | 2.0 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 1.3 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 1.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.4 | 1.1 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.2 | 0.8 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 0.7 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.7 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.7 | 22.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 4.1 | REACTOME INFLUENZA LIFE CYCLE | Genes involved in Influenza Life Cycle |
| 0.4 | 3.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.3 | 1.3 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 1.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 1.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.4 | 1.1 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.3 | 1.1 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |