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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G51220
Z-value: 0.74
Transcription factors associated with AT1G51220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G51220
|
AT1G51220 | WIP domain protein 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WIP5 | arTal_v1_Chr1_-_18992149_18992149 | -0.58 | 1.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 1.23 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr2_+_16476198_16476216 Show fit | 1.22 |
AT2G39470.1
AT2G39470.2 AT2G39470.3 |
PsbP-like protein 2 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 1.16 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_17831619_17831619 Show fit | 1.09 |
AT4G37925.1
|
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 1.03 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr5_+_6457026_6457026 Show fit | 1.02 |
AT5G19190.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_23328789_23328789 Show fit | 0.99 |
AT3G63140.1
|
chloroplast stem-loop binding protein of 41 kDa |
|
| arTal_v1_Chr4_+_12876822_12876948 Show fit | 0.91 |
AT4G25080.6
AT4G25080.5 AT4G25080.2 AT4G25080.1 AT4G25080.3 AT4G25080.4 |
magnesium-protoporphyrin IX methyltransferase |
|
| arTal_v1_Chr5_-_6222300_6222300 Show fit | 0.89 |
AT5G18660.1
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 0.83 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G51220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.6 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 2.3 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.3 | 2.1 | GO:0043489 | RNA stabilization(GO:0043489) |
| 0.1 | 2.1 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.0 | 1.6 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 1.5 | GO:1901259 | chloroplast rRNA processing(GO:1901259) |
| 0.0 | 1.5 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 1.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.4 | GO:2000896 | amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896) |
| 0.1 | 1.3 | GO:0006535 | cysteine biosynthetic process from serine(GO:0006535) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 3.2 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 3.0 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 2.7 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 2.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 2.5 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 1.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 1.6 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 1.4 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 2.5 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 2.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.0 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.0 | 2.0 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 1.9 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 1.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 1.4 | GO:0004373 | glycogen (starch) synthase activity(GO:0004373) |
| 0.1 | 1.4 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.3 | 1.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.6 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.5 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.2 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
| 0.1 | 0.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 0.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.0 | 0.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.6 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.4 | REACTOME TELOMERE MAINTENANCE | Genes involved in Telomere Maintenance |
| 0.1 | 0.3 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.0 | 0.3 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
| 0.1 | 0.2 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |