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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G50640
Z-value: 0.47
Transcription factors associated with AT1G50640
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G50640
|
AT1G50640 | ethylene responsive element binding factor 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF3 | arTal_v1_Chr1_-_18758708_18758708 | 0.77 | 2.1e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 4.96 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr1_+_3066674_3066753 Show fit | 3.01 |
AT1G09500.1
AT1G09500.2 AT1G09500.3 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 2.77 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr5_+_18390942_18390942 Show fit | 2.61 |
AT5G45380.1
|
urea-proton symporter DEGRADATION OF UREA 3 (DUR3) |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 2.54 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 2.47 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_826585_826585 Show fit | 2.46 |
AT3G03470.1
|
cytochrome P450, family 87, subfamily A, polypeptide 9 |
|
| arTal_v1_Chr5_-_23896702_23896702 Show fit | 2.40 |
AT5G59220.2
|
PP2C protein (Clade A protein phosphatases type 2C) |
|
| arTal_v1_Chr3_-_16923299_16923299 Show fit | 2.40 |
AT3G46080.1
|
C2H2-type zinc finger family protein |
|
| arTal_v1_Chr5_-_23896939_23896939 Show fit | 2.36 |
AT5G59220.1
|
PP2C protein (Clade A protein phosphatases type 2C) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G50640
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.2 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.2 | 11.1 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 7.1 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.0 | 5.5 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 1.7 | 5.1 | GO:0016110 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.7 | 5.0 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.0 | 5.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 4.8 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.0 | 4.4 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.2 | 3.9 | GO:0080027 | response to herbivore(GO:0080027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.1 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 8.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 7.2 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 6.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.3 | 4.5 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 3.6 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 3.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 2.6 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
| 0.0 | 2.4 | GO:0044217 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 2.3 | GO:0009524 | phragmoplast(GO:0009524) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.3 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 11.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.8 | 7.5 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.1 | 6.8 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 5.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 5.0 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.4 | 4.8 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.2 | 4.8 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.2 | 4.3 | GO:0015248 | sterol transporter activity(GO:0015248) |
| 1.0 | 3.9 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.8 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.1 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.9 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.1 | 1.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.2 | 1.2 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.0 | 1.0 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.2 | 0.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.0 | 0.5 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.2 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.0 | 0.2 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |