Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G49560
Z-value: 1.85
Transcription factors associated with AT1G49560
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G49560
|
AT1G49560 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G49560 | arTal_v1_Chr1_+_18342451_18342466 | -0.36 | 6.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 3.83 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 3.77 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 3.57 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 3.31 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr3_+_23266227_23266227 Show fit | 2.90 |
AT3G62950.1
|
Thioredoxin superfamily protein |
|
| arTal_v1_Chr1_+_26141726_26141836 Show fit | 2.88 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
expansin A1 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 2.87 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 2.85 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_11717432_11717437 Show fit | 2.82 |
AT2G27385.3
AT2G27385.2 AT2G27385.1 |
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_-_5966785_5966785 Show fit | 2.63 |
AT5G18020.1
|
SAUR-like auxin-responsive protein family |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G49560
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 12.0 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 10.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.4 | 9.9 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.5 | 9.8 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.4 | 8.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 7.3 | GO:0010114 | response to red light(GO:0010114) |
| 0.8 | 6.9 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 6.1 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.1 | 6.0 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 5.4 | GO:0010207 | photosystem II assembly(GO:0010207) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 57.5 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 44.3 | GO:0009507 | chloroplast(GO:0009507) |
| 0.3 | 20.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 18.4 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 10.3 | GO:0009579 | thylakoid(GO:0009579) |
| 0.5 | 8.4 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.2 | 7.1 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 6.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.6 | 5.2 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
| 0.0 | 5.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 11.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.8 | 10.5 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.7 | 6.5 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.0 | 6.3 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 6.1 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.3 | 5.9 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 5.8 | GO:0005506 | iron ion binding(GO:0005506) |
| 1.0 | 5.7 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 5.5 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 0.1 | 4.4 | GO:0070008 | serine-type exopeptidase activity(GO:0070008) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.2 | 1.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.1 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
| 0.2 | 1.0 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.9 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.3 | 0.8 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.6 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.1 | 0.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.8 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.3 | 1.0 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.2 | 1.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 0.7 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 0.7 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.1 | 0.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.6 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.6 | REACTOME POST TRANSLATIONAL PROTEIN MODIFICATION | Genes involved in Post-translational protein modification |
| 0.2 | 0.5 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.5 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |