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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G49480
Z-value: 1.15
Transcription factors associated with AT1G49480
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G49480
|
AT1G49480 | related to vernalization1 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RTV1 | arTal_v1_Chr1_-_18315650_18315650 | 0.35 | 6.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.81 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_3066674_3066753 Show fit | 3.30 |
AT1G09500.1
AT1G09500.2 AT1G09500.3 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 3.28 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 3.26 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 3.25 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 3.16 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_-_15859911_15859911 Show fit | 3.10 |
AT5G39610.1
|
NAC domain containing protein 6 |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 3.03 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 3.02 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr1_+_5290747_5290747 Show fit | 3.01 |
AT1G15380.2
|
Lactoylglutathione lyase / glyoxalase I family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G49480
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 18.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 16.6 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.1 | 16.0 | GO:0007568 | aging(GO:0007568) |
| 0.2 | 15.8 | GO:0042594 | response to starvation(GO:0042594) |
| 0.0 | 14.9 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 14.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 11.9 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 1.3 | 11.6 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 0.6 | 11.2 | GO:0019374 | galactolipid metabolic process(GO:0019374) |
| 0.0 | 10.0 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 23.9 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 17.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 13.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 11.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.2 | 10.9 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 9.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 8.8 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 8.2 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 1.2 | 7.0 | GO:0005776 | autophagosome(GO:0005776) |
| 0.3 | 6.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 47.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 47.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 14.0 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 13.2 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.2 | 12.3 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 1.6 | 10.9 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.2 | 10.8 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.1 | 10.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 8.5 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 7.3 | GO:0043130 | ubiquitin binding(GO:0043130) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.4 | 1.8 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.5 | 1.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 1.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 1.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.2 | 1.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 1.1 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 1.0 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 1.0 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 6.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 2.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 1.6 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.4 | 1.5 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.2 | 1.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.4 | 1.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.0 | 1.1 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.2 | 0.9 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.1 | 0.8 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.1 | 0.8 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |