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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G49010
Z-value: 1.44
Transcription factors associated with AT1G49010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G49010
|
AT1G49010 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G49010 | arTal_v1_Chr1_+_18132545_18132545 | -0.19 | 3.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 2.95 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 2.77 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 2.64 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr5_-_17909507_17909507 Show fit | 2.55 |
AT5G44430.1
|
plant defensin 1.2C |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 2.53 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr1_-_19352791_19352791 Show fit | 2.49 |
AT1G52040.1
|
myrosinase-binding protein 1 |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 2.48 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 2.28 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_11089123_11089123 Show fit | 2.27 |
AT2G26020.1
|
plant defensin 1.2b |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 2.22 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G49010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.9 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 8.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 7.6 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.2 | 6.7 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 6.7 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 6.4 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.1 | 5.9 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.1 | 5.5 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.0 | 5.5 | GO:0015031 | protein transport(GO:0015031) |
| 0.1 | 5.1 | GO:0000209 | protein polyubiquitination(GO:0000209) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 46.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 34.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 10.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 7.9 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 7.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 6.3 | GO:0009504 | cell plate(GO:0009504) |
| 0.1 | 5.5 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 5.2 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 5.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.3 | 4.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 26.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 23.4 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.0 | 20.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 18.9 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 10.7 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.1 | 8.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 6.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.1 | 6.0 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.1 | 5.2 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.2 | 4.6 | GO:0015248 | sterol transporter activity(GO:0015248) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.0 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.1 | 0.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.5 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
| 0.1 | 0.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.4 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.4 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.4 | PID NOTCH PATHWAY | Notch signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.3 | 2.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.4 | 1.7 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.3 | 1.3 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 1.2 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.0 | 1.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 1.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 1.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 0.8 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.2 | 0.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |