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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G47655
Z-value: 0.67
Transcription factors associated with AT1G47655
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G47655
|
AT1G47655 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G47655 | arTal_v1_Chr1_+_17525342_17525342 | -0.64 | 2.5e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_216773_216773 Show fit | 2.65 |
AT5G01550.1
|
lectin receptor kinase a4.1 |
|
| arTal_v1_Chr4_+_12461907_12461907 Show fit | 2.63 |
AT4G24000.1
|
cellulose synthase like G2 |
|
| arTal_v1_Chr3_+_22216540_22216540 Show fit | 2.28 |
AT3G60140.2
AT3G60140.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr4_+_12463312_12463312 Show fit | 2.19 |
AT4G24000.2
|
cellulose synthase like G2 |
|
| arTal_v1_Chr1_+_7434235_7434272 Show fit | 2.15 |
AT1G21240.1
AT1G21240.2 |
wall associated kinase 3 |
|
| arTal_v1_Chr5_-_9000345_9000345 Show fit | 2.13 |
AT5G25820.1
|
Exostosin family protein |
|
| arTal_v1_Chr5_+_4271730_4271730 Show fit | 2.00 |
AT5G13330.1
|
related to AP2 6l |
|
| arTal_v1_Chr2_-_19315241_19315343 Show fit | 1.99 |
AT2G47000.7
AT2G47000.1 AT2G47000.2 AT2G47000.4 AT2G47000.3 |
ATP binding cassette subfamily B4 |
|
| arTal_v1_Chr4_-_6718550_6718550 Show fit | 1.97 |
AT4G10960.1
|
UDP-D-glucose/UDP-D-galactose 4-epimerase 5 |
|
| arTal_v1_Chr4_-_9393650_9393650 Show fit | 1.92 |
AT4G16690.1
|
methyl esterase 16 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G47655
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.1 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.2 | 4.8 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.1 | 4.4 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.7 | 3.6 | GO:0060919 | auxin influx(GO:0060919) |
| 0.3 | 3.4 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.1 | 2.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 2.6 | GO:0006897 | endocytosis(GO:0006897) |
| 0.5 | 2.5 | GO:0019323 | pentose catabolic process(GO:0019323) |
| 0.0 | 2.5 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.2 | 2.4 | GO:0006308 | DNA catabolic process(GO:0006308) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.6 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.0 | 4.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 3.3 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 2.2 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 1.7 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 1.2 | GO:0035861 | site of double-strand break(GO:0035861) |
| 0.1 | 1.2 | GO:0030125 | clathrin vesicle coat(GO:0030125) |
| 0.0 | 1.2 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
| 0.0 | 1.2 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 1.2 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 5.1 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.1 | 4.8 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.5 | 3.6 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.3 | 3.1 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.3 | 2.6 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 2.5 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.3 | 2.4 | GO:0008296 | 3'-5'-exodeoxyribonuclease activity(GO:0008296) |
| 0.0 | 2.4 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
| 0.0 | 2.3 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.2 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 0.6 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.3 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 1.0 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 0.8 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.7 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 0.3 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |