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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G46768
Z-value: 0.68
Transcription factors associated with AT1G46768
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G46768
|
AT1G46768 | related to AP2 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.1 | arTal_v1_Chr1_-_17266724_17266824 | -0.25 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_9062093_9062093 Show fit | 1.60 |
AT2G21140.1
|
proline-rich protein 2 |
|
| arTal_v1_Chr1_-_1349478_1349478 Show fit | 1.23 |
AT1G04800.1
|
glycine-rich protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 1.17 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_+_14304921_14304921 Show fit | 1.14 |
AT4G29020.2
AT4G29020.1 |
glycine-rich protein |
|
| arTal_v1_Chr3_+_5471735_5471735 Show fit | 1.14 |
AT3G16150.1
|
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 1.13 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 1.09 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr1_-_3880391_3880391 Show fit | 1.07 |
AT1G11545.1
|
xyloglucan endotransglucosylase/hydrolase 8 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.05 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr5_+_21020014_21020014 Show fit | 1.01 |
AT5G51750.1
|
subtilase 1.3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G46768
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.8 | GO:0009942 | longitudinal axis specification(GO:0009942) |
| 0.0 | 1.5 | GO:0035825 | reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825) |
| 0.0 | 1.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.4 | GO:0006022 | aminoglycan metabolic process(GO:0006022) aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.1 | 1.4 | GO:0046855 | inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545) |
| 0.0 | 1.4 | GO:0016106 | sesquiterpenoid biosynthetic process(GO:0016106) |
| 0.4 | 1.2 | GO:0015840 | urea transport(GO:0015840) |
| 0.1 | 1.2 | GO:0009554 | megasporogenesis(GO:0009554) |
| 0.1 | 1.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 4.6 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 4.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.9 | GO:0005874 | microtubule(GO:0005874) |
| 0.0 | 1.5 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.5 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 1.3 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.1 | 0.9 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 0.9 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.7 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 1.7 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 1.6 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.4 | 1.5 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
| 0.1 | 1.4 | GO:0004439 | phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity(GO:0004439) phosphatidylinositol phosphate 5-phosphatase activity(GO:0034595) |
| 0.1 | 1.4 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.1 | 1.3 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
| 0.1 | 1.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.3 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 1.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |