GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G45249
|
AT1G45249 | abscisic acid responsive elements-binding factor 2 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ABF2 | arTal_v1_Chr1_-_17167741_17167924 | -0.78 | 1.2e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr3_+_10255906_10255941 Show fit | 4.38 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
arTal_v1_Chr1_+_3157501_3157501 Show fit | 4.26 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
arTal_v1_Chr5_-_15378416_15378416 Show fit | 4.10 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
arTal_v1_Chr5_-_15378642_15378642 Show fit | 4.09 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
arTal_v1_Chr4_-_7493080_7493080 Show fit | 3.58 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
arTal_v1_Chr2_+_14577083_14577083 Show fit | 3.37 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
|
arTal_v1_Chr4_-_17777445_17777445 Show fit | 3.35 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
arTal_v1_Chr1_+_6612630_6612630 Show fit | 3.23 |
AT1G19150.1
|
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
|
arTal_v1_Chr5_+_26298728_26298728 Show fit | 3.21 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
arTal_v1_Chr2_+_16130290_16130290 Show fit | 3.20 |
AT2G38540.1
|
lipid transfer protein 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 25.3 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
0.2 | 20.4 | GO:0015979 | photosynthesis(GO:0015979) |
0.2 | 13.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
0.1 | 12.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
0.5 | 10.3 | GO:0006949 | syncytium formation(GO:0006949) |
0.1 | 8.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
0.4 | 7.1 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
0.5 | 4.9 | GO:0006168 | adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096) |
0.1 | 4.9 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
0.7 | 4.8 | GO:0045038 | protein import into chloroplast thylakoid membrane(GO:0045038) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 47.1 | GO:0009579 | thylakoid(GO:0009579) |
0.0 | 33.1 | GO:0005576 | extracellular region(GO:0005576) |
0.4 | 24.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
0.0 | 19.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
0.3 | 16.3 | GO:0010287 | plastoglobule(GO:0010287) |
0.9 | 12.4 | GO:0009522 | photosystem I(GO:0009522) |
0.0 | 8.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
1.2 | 6.0 | GO:0010007 | magnesium chelatase complex(GO:0010007) |
0.0 | 4.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
0.0 | 4.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 19.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
2.3 | 13.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
0.1 | 9.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.2 | 7.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
0.0 | 7.3 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.1 | 6.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
1.0 | 6.0 | GO:0051003 | magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003) |
1.4 | 5.8 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
0.2 | 5.8 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
0.6 | 4.9 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.2 | 0.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.1 | 0.5 | PID S1P S1P1 PATHWAY | S1P1 pathway |
0.0 | 0.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 1.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
0.1 | 1.0 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
0.0 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 0.7 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
0.2 | 0.5 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.4 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.1 | 0.2 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.0 | 0.2 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |