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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G44830
Z-value: 1.56
Transcription factors associated with AT1G44830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G44830
|
AT1G44830 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G44830 | arTal_v1_Chr1_+_16933699_16933699 | 0.23 | 2.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 8.45 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 7.99 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 7.04 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 6.42 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 6.25 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 6.24 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 6.12 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 5.95 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 5.91 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 5.89 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G44830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 17.3 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 11.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 10.1 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.2 | 8.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 2.8 | 8.4 | GO:0015840 | urea transport(GO:0015840) |
| 0.4 | 7.3 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.4 | 6.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 6.1 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.6 | 6.0 | GO:0032876 | negative regulation of DNA endoreduplication(GO:0032876) |
| 0.5 | 6.0 | GO:0009554 | megasporogenesis(GO:0009554) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 57.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 36.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 31.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 29.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 10.8 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.2 | 10.7 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 7.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 6.8 | GO:0005874 | microtubule(GO:0005874) |
| 0.6 | 6.7 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 6.4 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.4 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.4 | 9.7 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.4 | 9.3 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.2 | 9.3 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.1 | 8.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.3 | 8.5 | GO:0005179 | hormone activity(GO:0005179) |
| 2.8 | 8.4 | GO:0015204 | ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204) |
| 0.4 | 7.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.3 | 7.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 7.0 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 1.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 2.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.2 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.2 | 1.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.2 | 0.6 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.2 | 0.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |