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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G43160
Z-value: 1.70
Transcription factors associated with AT1G43160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G43160
|
AT1G43160 | related to AP2 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.6 | arTal_v1_Chr1_+_16263805_16263805 | -0.72 | 1.7e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 12.38 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 10.19 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 9.54 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 8.84 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 8.55 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 8.48 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 8.46 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 8.24 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 8.16 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 7.42 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G43160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.9 | 37.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.4 | 36.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 15.1 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.7 | 12.6 | GO:0048829 | root cap development(GO:0048829) |
| 0.2 | 12.2 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.4 | 12.0 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.2 | 11.9 | GO:0010114 | response to red light(GO:0010114) |
| 0.8 | 11.4 | GO:1902183 | regulation of shoot apical meristem development(GO:1902183) |
| 0.2 | 9.5 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.6 | 9.2 | GO:0010315 | auxin efflux(GO:0010315) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 128.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 56.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.3 | 49.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 45.3 | GO:0048046 | apoplast(GO:0048046) |
| 1.0 | 24.4 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 18.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 1.9 | 14.9 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 12.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 12.4 | GO:0010319 | stromule(GO:0010319) |
| 1.6 | 11.4 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 30.1 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.2 | 22.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.3 | 21.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 15.6 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 14.1 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.5 | 13.4 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.4 | 10.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 10.7 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.2 | 9.6 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 1.6 | 9.5 | GO:0051723 | protein methylesterase activity(GO:0051723) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.7 | 2.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 2.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 2.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.2 | 1.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 1.1 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 11.4 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.7 | 5.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.6 | 3.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.6 | 2.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.3 | 2.0 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.3 | 1.9 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.6 | 1.8 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.9 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |