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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G36060

Z-value: 1.59

Transcription factors associated with AT1G36060

Gene Symbol Gene ID Gene Info
AT1G36060
AT1G36060 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G36060arTal_v1_Chr1_-_13456336_13456336-0.029.1e-01Click!

Activity profile of AT1G36060 motif

Sorted Z-values of AT1G36060 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_18098633 14.71 AT4G38770.1
PRP4
proline-rich protein 4
Chr5_+_8863224 11.74 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr1_+_27338034 9.74 AT1G72600.2
AT1G72600.1
AT1G72600
hydroxyproline-rich glycoprotein family protein
Chr5_-_22560461 9.46 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr2_-_1800472 9.22 AT2G05070.1
LHCB2.2
photosystem II light harvesting complex protein 2.2
Chr2_+_8940833 9.14 AT2G20750.2
AT2G20750.1
EXPB1
expansin B1
Chr5_+_4087689 9.11 AT5G12940.1
AT5G12940
Leucine-rich repeat (LRR) family protein
Chr1_+_7886323 8.10 AT1G22330.1
AT1G22330
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_-_2334185 8.08 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr3_-_23328789 7.73 AT3G63140.1
CSP41A
chloroplast stem-loop binding protein of 41 kDa
Chr1_-_3880391 7.56 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr5_+_21479382 7.27 AT5G52970.1
AT5G52970.2
AT5G52970
thylakoid lumen 15.0 kDa protein
Chr1_-_6319427 6.88 AT1G18360.1
AT1G18360
alpha/beta-Hydrolases superfamily protein
Chr3_+_17949416 6.82 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_28428671 6.81 AT1G75710.1
AT1G75710
C2H2-like zinc finger protein
Chr4_-_13958107 6.73 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_24990331 6.65 AT5G62220.1
GT18
glycosyltransferase 18
Chr4_+_12876822 6.64 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr4_-_13398307 6.53 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr2_+_6399621 6.35 AT2G14890.2
AGP9
arabinogalactan protein 9
Chr4_+_160643 6.26 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr4_+_11663186 6.22 AT4G22010.1
sks4
SKU5 similar 4
Chr3_+_2717557 6.17 AT3G08940.2
AT3G08940.1
LHCB4.2
light harvesting complex photosystem II
Chr4_-_16806830 6.16 AT4G35320.1
AT4G35320
hypothetical protein
Chr2_-_15797059 6.14 AT2G37660.1
AT2G37660
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_+_6399405 5.87 AT2G14890.1
AGP9
arabinogalactan protein 9
Chr5_+_6387341 5.81 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr1_-_8559066 5.68 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_6105908 5.66 AT3G17840.1
RLK902
receptor-like kinase 902
Chr4_+_14304921 5.66 AT4G29020.2
AT4G29020.1
AT4G29020
glycine-rich protein
Chr3_-_9723904 5.59 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr4_-_14439723 5.57 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr3_-_18834834 5.39 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr3_+_10505711 5.38 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr3_-_1855063 5.28 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr3_-_9255083 5.17 AT3G25500.1
AFH1
formin homology 1
Chr2_+_19145218 5.00 AT2G46630.1
AT2G46630
serine/arginine repetitive matrix protein
Chr1_+_19879405 4.93 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr5_-_3709403 4.91 AT5G11550.1
AT5G11550
ARM repeat superfamily protein
Chr1_-_1349478 4.76 AT1G04800.1
AT1G04800
glycine-rich protein
Chr1_-_9458176 4.74 AT1G27210.1
AT1G27210
ARM repeat superfamily protein
Chr5_+_24667873 4.71 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr4_+_9739518 4.70 AT4G17460.1
HAT1
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Chr4_+_7758275 4.64 AT4G13340.1
LRX3
Leucine-rich repeat (LRR) family protein
Chr4_-_11785937 4.64 AT4G22290.1
AT4G22290
Ubiquitin-specific protease family C19-related protein
Chr1_+_21159736 4.58 AT1G56500.2
AT1G56500.1
AT1G56500.3
AT1G56500
haloacid dehalogenase-like hydrolase family protein
Chr1_-_7040231 4.49 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr2_-_183639 4.45 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr5_+_72292 4.43 AT5G01190.2
AT5G01190.1
LAC10
laccase 10
Chr5_+_25191860 4.34 AT5G62720.2
AT5G62720
Integral membrane HPP family protein
Chr5_+_25191402 4.30 AT5G62720.1
AT5G62720
Integral membrane HPP family protein
Chr5_+_6387735 4.28 AT5G19090.5
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr2_-_13864596 4.25 AT2G32690.2
AT2G32690.3
AT2G32690.5
AT2G32690.4
AT2G32690.1
GRP23
glycine-rich protein 23
Chr2_-_5675995 4.20 AT2G13610.1
ABCG5
ABC-2 type transporter family protein
Chr5_+_17697842 4.04 AT5G43990.4
AT5G43990.10
AT5G43990.7
AT5G43990.6
AT5G43990.1
AT5G43990.11
AT5G43990.9
AT5G43990.8
AT5G43990.17
AT5G43990.13
AT5G43990.12
AT5G43990.15
AT5G43990.16
AT5G43990.14
AT5G43990.3
AT5G43990.2
SUVR2
SET-domain containing protein lysine methyltransferase family protein
Chr3_-_21805335 3.96 AT3G59010.1
PME61
pectin methylesterase 61
Chr4_-_9331646 3.96 AT4G16563.1
AT4G16563
Eukaryotic aspartyl protease family protein
Chr2_-_18706266 3.94 AT2G45400.4
AT2G45400.2
AT2G45400.1
BEN1
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_+_10072057 3.86 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr1_-_18378634 3.65 AT1G49650.1
AT1G49650
alpha/beta-Hydrolases superfamily protein
Chr4_+_15779911 3.62 AT4G32710.1
PERK14
Protein kinase superfamily protein
Chr4_+_15875342 3.58 AT4G32890.1
GATA9
GATA transcription factor 9
Chr1_+_29345851 3.51 AT1G78040.2
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_29345662 3.51 AT1G78040.3
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr5_+_13934108 3.46 AT5G35760.1
AT5G35760
Beta-galactosidase related protein
Chr5_-_25258704 3.40 AT5G62940.1
HCA2
Dof-type zinc finger DNA-binding family protein
Chr1_+_29344539 3.39 AT1G78040.1
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr5_-_22194559 3.37 AT5G54630.1
AT5G54630
zinc finger protein-like protein
Chr5_+_5483260 3.36 AT5G16710.1
DHAR3
dehydroascorbate reductase 1
Chr3_+_6797471 3.29 AT3G19570.2
AT3G19570.3
AT3G19570.4
AT3G19570.1
SCO3
SNOWY COTYLEDON protein (DUF566)
Chr1_+_20048434 3.28 AT1G53700.1
WAG1
WAG 1
Chr2_-_7130729 3.26 AT2G16440.1
MCM4
Minichromosome maintenance (MCM2/3/5) family protein
Chr1_-_25514601 3.25 AT1G68060.1
MAP70-1
microtubule-associated proteins 70-1
Chr5_-_17258077 3.22 AT5G43020.1
AT5G43020
Leucine-rich repeat protein kinase family protein
Chr3_-_22933362 3.21 AT3G61920.1
AT3G61920
UvrABC system protein C
Chr1_-_23542198 3.19 AT1G63480.6
AT1G63480.7
AT1G63480.4
AT1G63480.5
AT1G63480.3
AT1G63480.1
AT1G63480.2
AT1G63480
AT hook motif DNA-binding family protein
Chr5_-_21154395 3.14 AT5G52060.1
BAG1
BCL-2-associated athanogene 1
Chr1_+_19812087 3.10 AT1G53163.1
AT1G53163
membrane-associated kinase regulator
Chr1_+_21241579 3.10 AT1G56670.1
AT1G56670.2
AT1G56670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_7984833 3.04 AT3G22540.1
AT3G22540
hypothetical protein (DUF1677)
Chr5_-_19635664 3.03 AT5G48450.1
AT5G48450.2
sks3
SKU5 similar 3
Chr2_+_18262189 2.98 AT2G44160.1
MTHFR2
methylenetetrahydrofolate reductase 2
Chr4_-_75384 2.96 AT4G00180.2
YAB3
Plant-specific transcription factor YABBY family protein
Chr4_-_75576 2.91 AT4G00180.1
YAB3
Plant-specific transcription factor YABBY family protein
Chr5_-_24987811 2.84 AT5G62210.1
AT5G62210
Embryo-specific protein 3, (ATS3)
Chr5_+_24758361 2.82 AT5G61570.2
AT5G61570
Protein kinase superfamily protein
Chr1_+_28241011 2.81 AT1G75240.1
HB33
homeobox protein 33
Chr1_+_5448611 2.78 AT1G15830.1
AT1G15830.3
AT1G15830
hypothetical protein
Chr5_+_24758189 2.71 AT5G61570.1
AT5G61570
Protein kinase superfamily protein
Chr1_+_3951553 2.67 AT1G11720.1
SS3
starch synthase 3
Chr5_+_8589457 2.64 AT5G24930.1
COL4
zinc finger CONSTANS-like protein
Chr3_+_17993999 2.64 AT3G48550.2
AT3G48550
SHOOT GRAVITROPISM-like protein
Chr1_+_3951366 2.62 AT1G11720.2
SS3
starch synthase 3
Chr3_-_2771375 2.58 AT3G09070.1
OPS
LOW protein: UPF0503-like protein, putative (DUF740)
Chr2_-_15589369 2.56 AT2G37090.1
IRX9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_+_26136002 2.55 AT5G65410.1
HB25
homeobox protein 25
Chr4_-_1178489 2.55 AT4G02670.1
AT4G02670.2
IDD12
indeterminate(ID)-domain 12
Chr3_+_21238223 2.54 AT3G57400.1
AT3G57400
transmembrane protein
Chr4_-_8966351 2.54 AT4G15740.1
AT4G15740
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr2_+_959645 2.48 AT2G03160.1
SK19
SKP1-like 19
Chr3_+_17993819 2.44 AT3G48550.1
AT3G48550
SHOOT GRAVITROPISM-like protein
Chr4_+_729863 2.41 AT4G01690.1
AT4G01690.2
PPOX
Flavin containing amine oxidoreductase family
Chr2_-_18705625 2.41 AT2G45400.3
BEN1
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_+_14003128 2.39 AT2G32990.1
GH9B8
glycosyl hydrolase 9B8
Chr4_-_15646844 2.38 AT4G32410.1
CESA1
cellulose synthase 1
Chr3_-_1822858 2.38 AT3G06030.1
NP3
NPK1-related protein kinase 3
Chr4_-_13964229 2.36 AT4G28090.1
sks10
SKU5 similar 10
Chr1_-_10313755 2.35 AT1G29470.2
AT1G29470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_10314147 2.35 AT1G29470.1
AT1G29470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_16202142 2.34 AT5G40460.1
AT5G40460
cyclin-dependent kinase inhibitor SMR3-like protein
Chr1_+_618061 2.33 AT1G02810.1
AT1G02810
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_+_4274531 2.31 AT1G12550.1
HPR3
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Chr2_+_17627894 2.31 AT2G42320.4
AT2G42320.1
AT2G42320
nucleolar protein gar2-like protein
Chr1_-_966704 2.30 AT1G03830.1
AT1G03830.2
AT1G03830
guanylate-binding family protein
Chr1_-_24683986 2.30 AT1G66235.1
AT1G66235.2
AT1G66235
no-apical-meristem-associated carboxy-terminal domain protein
Chr1_+_1086170 2.29 AT1G04160.2
AT1G04160.1
XIB
myosin XI B
Chr1_+_5448060 2.27 AT1G15830.2
AT1G15830
hypothetical protein
Chr2_+_17627331 2.25 AT2G42320.2
AT2G42320.3
AT2G42320
nucleolar protein gar2-like protein
Chr1_-_4281131 2.23 AT1G12570.1
AT1G12570
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr3_-_2343697 2.23 AT3G07340.2
AT3G07340.1
AT3G07340
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_19805663 2.21 AT3G53420.2
AT3G53420.1
PIP2A
plasma membrane intrinsic protein 2A
Chr2_+_9406059 2.20 AT2G22125.1
CSI1
binding protein
Chr2_-_13833342 2.19 AT2G32590.1
EMB2795
condensin complex subunit
Chr4_+_14082660 2.19 AT4G28500.1
NAC073
NAC domain containing protein 73
Chr3_+_5061681 2.18 AT3G15030.2
AT3G15030.3
AT3G15030.4
AT3G15030.1
TCP4
TCP family transcription factor 4
Chr5_-_1010613 2.15 AT5G03795.1
AT5G03795
Exostosin family protein
Chr4_-_7174439 2.14 AT4G11950.1
AT4G11950
transmembrane protein, putative (DUF1191)
Chr2_+_15119516 2.12 AT2G36010.3
AT2G36010.1
AT2G36010.2
E2F3
E2F transcription factor 3
Chr2_+_8545634 2.11 AT2G19806.1
AT2G19806

Chr5_-_1558486 2.10 AT5G05250.1
AT5G05250
hypothetical protein
Chr2_-_13747810 2.09 AT2G32380.1
AT2G32380
Transmembrane protein 97, Putative
Chr4_-_17112926 2.09 AT4G36160.3
NAC076
NAC domain containing protein 76
Chr3_+_10445841 2.05 AT3G28060.1
UMAMIT43-psi
Nodulin MtN21 /EamA-like transporter family protein
Chr5_-_1894124 2.05 AT5G06250.2
AT5G06250.1
AT5G06250.3
AT5G06250.4
AT5G06250.5
DPA4
AP2/B3-like transcriptional factor family protein
Chr4_-_17113486 2.04 AT4G36160.2
NAC076
NAC domain containing protein 76
Chr4_+_11306945 2.04 AT4G21210.2
AT4G21210.1
RP1
PPDK regulatory protein
Chr4_-_17114141 2.04 AT4G36160.1
NAC076
NAC domain containing protein 76
Chr3_-_3102048 2.02 AT3G10050.1
OMR1
L-O-methylthreonine resistant 1
Chr1_+_11094407 2.01 AT1G31090.1
AT1G31090
F-box family protein
Chr1_-_24438623 2.00 AT1G65710.1
AT1G65710
serine/arginine repetitive matrix-like protein
Chr5_+_15305847 2.00 AT5G38300.1
AT5G38300
homeobox Hox-B3-like protein
Chr2_+_15501726 1.99 AT2G36910.1
ABCB1
ATP binding cassette subfamily B1
Chr2_-_5598412 1.96 AT2G13440.1
AT2G13440
glucose-inhibited division family A protein
Chr2_+_17009951 1.96 AT2G40760.1
AT2G40760
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr3_-_18313621 1.94 AT3G49380.1
iqd15
IQ-domain 15
Chr3_+_10232242 1.93 AT3G27640.1
AT3G27640.2
AT3G27640
Transducin/WD40 repeat-like superfamily protein
Chr2_-_13373862 1.93 AT2G31360.1
ADS2
16:0delta9 desaturase 2
Chr2_-_13374018 1.92 AT2G31360.2
ADS2
16:0delta9 desaturase 2
Chr1_-_24946968 1.92 AT1G66870.1
AT1G66870
Carbohydrate-binding X8 domain superfamily protein
Chr1_-_24946717 1.92 AT1G66870.2
AT1G66870
Carbohydrate-binding X8 domain superfamily protein
Chr3_+_11278375 1.88 AT3G29370.1
P1R3
hypothetical protein
Chr1_+_8678858 1.87 AT1G24485.4
AT1G24485.2
AT1G24485.1
AT1G24485.3
AT1G24485
ER protein carbohydrate-binding protein
Chr1_+_23333619 1.87 AT1G62981.1
AT1G62981.2
AT1G62981.3
AT1G62981
transmembrane protein, putative (DUF1191)
Chr1_+_25018077 1.86 AT1G67035.2
AT1G67035.1
AT1G67035
homeobox Hox-B3-like protein
Chr5_-_3718276 1.85 AT5G11570.1
AT5G11570
Major facilitator superfamily protein
Chr1_-_6241510 1.84 AT1G18140.1
LAC1
laccase 1
Chr5_-_1742161 1.83 AT5G05790.2
AT5G05790.1
AT5G05790
Duplicated homeodomain-like superfamily protein
Chr2_+_18479053 1.82 AT2G44810.1
DAD1
alpha/beta-Hydrolases superfamily protein
Chr3_+_23315506 1.80 AT3G63095.1
AT3G63095
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_17721606 1.79 AT5G44040.1
AT5G44040
eisosome SEG2-like protein
Chr5_+_3799408 1.79 AT5G11790.2
AT5G11790.1
NDL2
N-MYC downregulated-like 2
Chr1_+_20481648 1.78 AT1G54940.1
PGSIP4
plant glycogenin-like starch initiation protein 4
Chr4_-_10464238 1.78 AT4G19120.3
AT4G19120.1
ERD3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_9406369 1.77 AT1G27090.1
AT1G27090
glycine-rich protein
Chr2_+_18478374 1.74 AT2G44810.2
DAD1
alpha/beta-Hydrolases superfamily protein
Chr4_-_16168711 1.73 AT4G33660.1
AT4G33660
cysteine-rich TM module stress tolerance protein
Chr5_-_3027114 1.69 AT5G09750.1
HEC3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_8877790 1.66 AT1G25320.1
AT1G25320
Leucine-rich repeat protein kinase family protein
Chr3_-_7111832 1.66 AT3G20390.1
AT3G20390.2
AT3G20390
endoribonuclease L-PSP family protein
Chr5_+_324428 1.66 AT5G01840.1
OFP1
ovate family protein 1
Chr3_-_10587759 1.65 AT3G28330.1
AT3G28330
F-box family protein-like protein
Chr3_+_2586001 1.65 AT3G08520.1
AT3G08520
Ribosomal protein L41 family
Chr3_-_2826922 1.65 AT3G09210.1
PTAC13
plastid transcriptionally active 13
Chr5_+_8116665 1.64 AT5G24020.1
MIND
septum site-determining protein (MIND)
Chr2_-_14073542 1.64 AT2G33205.4
AT2G33205.5
AT2G33205.9
AT2G33205.2
AT2G33205.3
AT2G33205.7
AT2G33205.6
AT2G33205.8
AT2G33205
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr4_-_10464001 1.63 AT4G19120.2
ERD3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_11309879 1.60 AT4G21213.1
AT4G21213
hypothetical protein
Chr5_+_2931963 1.59 AT5G09430.1
AT5G09430
alpha/beta-Hydrolases superfamily protein
Chr2_-_8409012 1.59 AT2G19410.2
AT2G19410.3
AT2G19410.1
AT2G19410
U-box domain-containing protein kinase family protein
Chr1_+_28750872 1.58 AT1G76610.1
AT1G76610
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_-_8136150 1.58 AT5G24070.1
AT5G24070
Peroxidase superfamily protein
Chr3_+_10494656 1.55 AT3G28160.1
AT3G28160

Chr3_+_8558060 1.54 AT3G23750.1
AT3G23750
Leucine-rich repeat protein kinase family protein
Chr4_+_12830915 1.52 AT4G24970.1
AT4G24970
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Chr5_+_15543481 1.51 AT5G38820.3
AT5G38820
Transmembrane amino acid transporter family protein
Chr3_+_8357569 1.50 AT3G23370.4
AT3G23370.3
AT3G23370.2
AT3G23370.1
AT3G23370
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_+_15700829 1.50 AT4G32540.1
AT4G32540.2
YUC1
Flavin-binding monooxygenase family protein
Chr2_-_14073211 1.49 AT2G33205.1
AT2G33205
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr5_+_17697686 1.48 AT5G43990.5
SUVR2
SET-domain containing protein lysine methyltransferase family protein
Chr3_-_5137195 1.47 AT3G15250.1
AT3G15250
TPRXL
Chr5_+_8005097 1.47 AT5G23730.1
RUP2
Transducin/WD40 repeat-like superfamily protein
Chr5_+_454777 1.46 AT5G02250.1
EMB2730
Ribonuclease II/R family protein
Chr1_-_9968301 1.45 AT1G28390.2
AT1G28390
Protein kinase superfamily protein
Chr1_-_9968495 1.45 AT1G28390.1
AT1G28390
Protein kinase superfamily protein
Chr5_-_24975632 1.45 AT5G62170.1
AT5G62170.2
AT5G62170.4
AT5G62170.3
TRM25
LOW protein: M-phase inducer phosphatase-like protein
Chr1_+_27279341 1.44 AT1G72460.1
AT1G72460
Leucine-rich repeat protein kinase family protein
Chr4_+_14685602 1.43 AT4G30040.1
AT4G30040
Eukaryotic aspartyl protease family protein
Chr2_+_911692 1.42 AT2G03080.1
AT2G03080

Chr1_-_26768215 1.41 AT1G70990.1
AT1G70990
proline-rich family protein
Chr5_-_17395148 1.41 AT5G43340.1
PHT1%3B6
phosphate transporter 1;6

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G36060

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.9 7.8 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
1.5 9.2 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
1.3 6.3 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
1.0 5.2 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.8 3.3 GO:1902292 cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.8 2.4 GO:0042817 pyridoxal metabolic process(GO:0042817)
0.6 7.7 GO:0032544 plastid translation(GO:0032544)
0.6 6.2 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.6 3.4 GO:0010731 protein glutathionylation(GO:0010731)
0.5 2.2 GO:0044380 protein localization to cytoskeleton(GO:0044380) anisotropic cell growth(GO:0051211) protein localization to microtubule cytoskeleton(GO:0072698)
0.5 3.4 GO:0090057 procambium histogenesis(GO:0010067) root radial pattern formation(GO:0090057)
0.5 9.1 GO:0006949 syncytium formation(GO:0006949)
0.5 5.9 GO:0010158 abaxial cell fate specification(GO:0010158)
0.4 4.5 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.4 5.3 GO:2000896 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.4 1.7 GO:0010500 transmitting tissue development(GO:0010500)
0.4 6.4 GO:0010315 auxin efflux(GO:0010315)
0.4 2.0 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.4 1.8 GO:0007142 male meiosis II(GO:0007142)
0.3 6.2 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.3 2.0 GO:0006567 threonine catabolic process(GO:0006567)
0.3 6.1 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.3 1.5 GO:1903960 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.3 7.0 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.3 5.5 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.3 2.6 GO:0010088 phloem development(GO:0010088)
0.3 2.6 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.2 2.1 GO:0010358 leaf shaping(GO:0010358)
0.2 2.2 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.2 2.2 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.2 3.0 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.2 8.8 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.2 2.6 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.2 2.1 GO:0051446 positive regulation of meiotic cell cycle(GO:0051446)
0.2 3.8 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.2 3.6 GO:0009901 anther dehiscence(GO:0009901)
0.2 3.6 GO:0006814 sodium ion transport(GO:0006814)
0.2 1.9 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.2 0.8 GO:0007266 Rho protein signal transduction(GO:0007266)
0.2 2.6 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.2 3.1 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.2 2.3 GO:0045492 xylan biosynthetic process(GO:0045492)
0.1 0.7 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 4.7 GO:0010582 floral meristem determinacy(GO:0010582)
0.1 4.0 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 4.7 GO:0051225 spindle assembly(GO:0051225)
0.1 4.9 GO:0009789 positive regulation of abscisic acid-activated signaling pathway(GO:0009789)
0.1 1.6 GO:0010274 hydrotropism(GO:0010274)
0.1 0.9 GO:0009819 drought recovery(GO:0009819)
0.1 2.2 GO:2000652 regulation of secondary cell wall biogenesis(GO:2000652)
0.1 12.1 GO:0080167 response to karrikin(GO:0080167)
0.1 6.6 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.1 4.8 GO:0048825 cotyledon development(GO:0048825)
0.1 2.6 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.1 2.1 GO:0010051 xylem and phloem pattern formation(GO:0010051)
0.1 3.8 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 1.4 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 2.8 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.1 2.4 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.1 0.2 GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.1 2.3 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.1 6.3 GO:0045490 pectin catabolic process(GO:0045490)
0.1 1.8 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 0.8 GO:0006526 arginine biosynthetic process(GO:0006526)
0.1 0.8 GO:0005987 sucrose catabolic process(GO:0005987)
0.1 0.5 GO:0031333 negative regulation of protein complex assembly(GO:0031333)
0.1 5.1 GO:0009630 gravitropism(GO:0009630)
0.1 0.2 GO:0030656 regulation of vitamin metabolic process(GO:0030656) regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.0 0.6 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 2.3 GO:0009853 photorespiration(GO:0009853)
0.0 0.1 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.0 0.4 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 1.1 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 1.2 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.5 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 1.0 GO:0043467 regulation of generation of precursor metabolites and energy(GO:0043467)
0.0 2.5 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.7 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.8 GO:0051782 negative regulation of cell division(GO:0051782)
0.0 1.2 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 0.8 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.2 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.3 GO:0006265 DNA topological change(GO:0006265)
0.0 0.9 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.0 2.2 GO:0043413 protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413)
0.0 0.1 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 1.0 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.0 0.1 GO:0051329 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.3 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 0.1 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.0 0.4 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.6 GO:0042127 regulation of cell proliferation(GO:0042127)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.9 5.6 GO:0043674 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
1.0 9.2 GO:0009517 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.5 2.2 GO:0010330 cellulose synthase complex(GO:0010330) microtubule end(GO:1990752)
0.4 2.2 GO:0000796 condensin complex(GO:0000796)
0.3 4.7 GO:0005880 nuclear microtubule(GO:0005880)
0.3 3.3 GO:0042555 MCM complex(GO:0042555)
0.3 3.3 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.2 15.3 GO:0010287 plastoglobule(GO:0010287)
0.2 7.3 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.2 3.1 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.1 2.6 GO:0016324 apical plasma membrane(GO:0016324)
0.1 24.0 GO:0009505 plant-type cell wall(GO:0009505)
0.1 33.6 GO:0031225 anchored component of membrane(GO:0031225)
0.1 0.7 GO:0005687 U4 snRNP(GO:0005687)
0.1 9.4 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 4.7 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 10.1 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.1 0.2 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.1 1.6 GO:0009508 plastid chromosome(GO:0009508)
0.1 1.5 GO:0000178 exosome (RNase complex)(GO:0000178)
0.1 0.3 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 2.6 GO:0016607 nuclear speck(GO:0016607)
0.0 11.7 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 8.5 GO:0048046 apoplast(GO:0048046)
0.0 1.2 GO:0090406 pollen tube(GO:0090406)
0.0 0.5 GO:0000145 exocyst(GO:0000145)
0.0 56.7 GO:0005576 extracellular region(GO:0005576)
0.0 3.0 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 1.6 GO:0005874 microtubule(GO:0005874)
0.0 1.7 GO:0000139 Golgi membrane(GO:0000139)
0.0 7.2 GO:0009941 chloroplast envelope(GO:0009941)
0.0 5.1 GO:0005730 nucleolus(GO:0005730)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 6.3 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
1.1 3.4 GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor(GO:0016672) glutathione dehydrogenase (ascorbate) activity(GO:0045174)
0.9 3.6 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.8 2.3 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.7 2.2 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.7 5.3 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.6 2.6 GO:0047517 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.6 2.4 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
0.6 15.4 GO:0016168 chlorophyll binding(GO:0016168)
0.4 3.8 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.4 8.1 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.4 6.4 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.3 2.0 GO:0016841 ammonia-lyase activity(GO:0016841)
0.3 3.0 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.3 6.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.3 5.6 GO:0005199 structural constituent of cell wall(GO:0005199)
0.3 0.8 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
0.3 0.8 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.3 3.1 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.3 8.1 GO:0008266 poly(U) RNA binding(GO:0008266)
0.2 7.6 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.2 2.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.2 4.1 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.2 0.7 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.2 1.2 GO:0001671 ATPase activator activity(GO:0001671)
0.2 2.4 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.2 3.3 GO:0003688 DNA replication origin binding(GO:0003688)
0.2 1.5 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.2 7.8 GO:0016759 cellulose synthase activity(GO:0016759)
0.2 6.6 GO:0008171 O-methyltransferase activity(GO:0008171)
0.1 5.5 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.1 1.8 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.1 1.4 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 3.8 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 3.4 GO:0008378 galactosyltransferase activity(GO:0008378)
0.1 4.0 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.1 6.7 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.1 3.6 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.1 1.5 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.1 2.4 GO:0008810 cellulase activity(GO:0008810)
0.1 0.7 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 0.2 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.1 0.2 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.1 2.3 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.1 14.4 GO:0005507 copper ion binding(GO:0005507)
0.1 11.7 GO:0008017 microtubule binding(GO:0008017)
0.1 0.8 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.1 0.8 GO:0008097 5S rRNA binding(GO:0008097)
0.0 0.2 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.0 0.1 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.0 2.4 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 4.5 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 0.6 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.7 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 4.2 GO:0050660 flavin adenine dinucleotide binding(GO:0050660)
0.0 7.3 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 7.7 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.4 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 1.2 GO:0031072 heat shock protein binding(GO:0031072)
0.0 1.6 GO:0043621 protein self-association(GO:0043621)
0.0 1.0 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.3 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.1 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.1 GO:0003680 AT DNA binding(GO:0003680)
0.0 1.0 GO:0003697 single-stranded DNA binding(GO:0003697)
0.0 0.6 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.0 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.0 4.3 GO:0046983 protein dimerization activity(GO:0046983)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.1 PID AP1 PATHWAY AP-1 transcription factor network
0.4 3.3 PID CMYB PATHWAY C-MYB transcription factor network
0.2 2.0 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.2 2.1 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.7 4.2 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.7 2.0 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.5 3.3 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.4 3.6 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation