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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G36060
Z-value: 1.59
Transcription factors associated with AT1G36060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G36060
|
AT1G36060 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G36060 | arTal_v1_Chr1_-_13456336_13456336 | -0.02 | 9.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 14.71 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 11.74 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_+_27338034_27338062 Show fit | 9.74 |
AT1G72600.2
AT1G72600.1 |
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 9.46 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 9.22 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 9.14 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 9.11 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_+_7886323_7886323 Show fit | 8.10 |
AT1G22330.1
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
|
| arTal_v1_Chr3_-_2334185_2334185 Show fit | 8.08 |
AT3G07320.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr3_-_23328789_23328789 Show fit | 7.73 |
AT3G63140.1
|
chloroplast stem-loop binding protein of 41 kDa |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G36060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.1 | GO:0080167 | response to karrikin(GO:0080167) |
| 1.5 | 9.2 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
| 0.5 | 9.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 8.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 1.9 | 7.8 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.6 | 7.7 | GO:0032544 | plastid translation(GO:0032544) |
| 0.3 | 7.0 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.1 | 6.6 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.4 | 6.4 | GO:0010315 | auxin efflux(GO:0010315) |
| 1.3 | 6.3 | GO:0010422 | regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 56.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 33.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 24.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 15.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 11.7 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 10.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 9.4 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 1.0 | 9.2 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 8.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 7.3 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 15.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 14.4 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.1 | 11.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.4 | 8.1 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.3 | 8.1 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.2 | 7.8 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.0 | 7.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.2 | 7.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 7.3 | GO:0042803 | protein homodimerization activity(GO:0042803) |
| 0.1 | 6.7 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.5 | 3.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 2.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 2.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.4 | 3.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.5 | 3.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.7 | 2.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.7 | 2.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |