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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G35460
Z-value: 1.15
Transcription factors associated with AT1G35460
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G35460
|
AT1G35460 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FBH1 | arTal_v1_Chr1_+_13039660_13039660 | -0.53 | 3.6e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 3.90 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 3.82 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 3.33 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 3.27 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 3.09 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 3.04 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 3.03 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.99 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.90 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.86 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G35460
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 16.5 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.2 | 12.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 1.8 | 11.0 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.6 | 10.5 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 9.3 | GO:0007017 | microtubule-based process(GO:0007017) |
| 0.7 | 7.8 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.4 | 6.6 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 6.1 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.1 | 6.0 | GO:0007051 | spindle organization(GO:0007051) |
| 0.1 | 4.7 | GO:0015979 | photosynthesis(GO:0015979) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 34.5 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 32.4 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.4 | 20.7 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 18.9 | GO:0010319 | stromule(GO:0010319) |
| 1.4 | 12.8 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 10.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 10.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 8.0 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.3 | 6.8 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.1 | 6.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 18.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.5 | 16.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 11.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.6 | 8.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 7.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.3 | 6.6 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.2 | 6.5 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 1.9 | 5.6 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.2 | 5.2 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.8 | 4.7 | GO:0016851 | magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 11.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 1.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 1.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 0.9 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.6 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.6 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.2 | 0.5 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 12.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.1 | 3.2 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.4 | 1.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 1.4 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.1 | 1.3 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 1.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.0 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 0.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 0.9 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |