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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G34670
Z-value: 2.91
Transcription factors associated with AT1G34670
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G34670
|
AT1G34670 | myb domain protein 93 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB93 | arTal_v1_Chr1_+_12709090_12709090 | -0.57 | 1.4e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 17.50 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 15.80 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 15.67 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 15.57 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 15.57 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 15.29 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 14.77 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 13.40 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 13.30 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 13.30 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G34670
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.8 | 63.0 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 2.8 | 53.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.7 | 40.1 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.5 | 36.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.5 | 32.4 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.3 | 27.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.5 | 23.2 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.2 | 22.8 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.4 | 21.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 2.1 | 18.8 | GO:0006656 | phosphatidylcholine biosynthetic process(GO:0006656) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 151.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 101.4 | GO:0009579 | thylakoid(GO:0009579) |
| 1.7 | 70.0 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 67.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 62.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 53.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 51.4 | GO:0009507 | chloroplast(GO:0009507) |
| 0.2 | 46.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.9 | 20.5 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.3 | 16.9 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 62.9 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 1.3 | 32.4 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.3 | 31.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.5 | 30.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 27.8 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.6 | 26.3 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.4 | 24.9 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.9 | 21.9 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 1.1 | 20.0 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 2.1 | 19.3 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.5 | 60.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.9 | 5.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.5 | 4.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.8 | 4.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.3 | 3.4 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.7 | 3.0 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.3 | 2.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 2.3 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 10.4 | 62.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.0 | 4.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.6 | 4.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 1.0 | 3.0 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.4 | 2.8 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.3 | 1.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.5 | 1.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 1.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.0 | 0.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |