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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G34180
Z-value: 1.16
Transcription factors associated with AT1G34180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G34180
|
AT1G34180 | NAC domain containing protein 16 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC016 | arTal_v1_Chr1_+_12448543_12448726 | 0.65 | 1.6e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.46 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 3.22 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 2.83 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 2.72 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 2.63 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 2.61 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 2.58 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 2.56 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 2.51 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 2.50 |
AT3G61930.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G34180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 41.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 18.4 | GO:0007568 | aging(GO:0007568) |
| 0.2 | 7.4 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.5 | 7.2 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.2 | 7.0 | GO:0042026 | protein refolding(GO:0042026) |
| 0.1 | 6.7 | GO:0006874 | cellular calcium ion homeostasis(GO:0006874) |
| 0.1 | 6.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 5.9 | GO:0050832 | defense response to fungus(GO:0050832) |
| 1.0 | 5.8 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.1 | 5.7 | GO:0000209 | protein polyubiquitination(GO:0000209) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 18.6 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 14.3 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 8.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 6.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 6.0 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 4.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 4.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 4.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 4.1 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.0 | 4.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 20.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 12.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 9.0 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 6.6 | GO:0003779 | actin binding(GO:0003779) |
| 0.1 | 6.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.9 | 6.3 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 6.3 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.1 | 6.2 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.1 | 5.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 5.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.9 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 1.7 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.4 | 1.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.3 | 0.9 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.9 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 0.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.5 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.4 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 2.7 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.5 | 2.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.3 | 1.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.6 | 1.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 1.2 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
| 0.1 | 1.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 1.0 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.2 | 1.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |