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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G33240
Z-value: 1.22
Transcription factors associated with AT1G33240
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G33240
|
AT1G33240 | GT-2-like 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GTL1 | arTal_v1_Chr1_-_12054753_12054753 | 0.51 | 5.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 5.61 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 4.99 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 4.98 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_5681380_5681380 Show fit | 3.97 |
AT3G16670.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 3.83 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_6976036_6976036 Show fit | 3.82 |
AT5G20630.1
|
germin 3 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 3.67 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr4_-_10391298_10391298 Show fit | 3.46 |
AT4G18970.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_10390991_10390991 Show fit | 3.44 |
AT4G18970.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 3.36 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G33240
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 17.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 16.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 15.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 13.3 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 13.0 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.2 | 11.3 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 10.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 9.5 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.1 | 8.4 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.2 | 8.0 | GO:0016129 | phytosteroid biosynthetic process(GO:0016129) brassinosteroid biosynthetic process(GO:0016132) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 157.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 64.1 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.2 | 37.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 30.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 20.4 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.3 | 19.1 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 10.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 8.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 1.0 | 8.8 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 7.4 | GO:0005874 | microtubule(GO:0005874) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 17.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 16.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 14.0 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 13.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 13.1 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 11.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 11.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 10.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 10.1 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.5 | 9.7 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.9 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.5 | 1.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.4 | 1.3 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 1.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.0 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.6 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.4 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.5 | 3.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 2.7 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.6 | 2.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.1 | 2.5 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.1 | 1.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.2 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.5 | 1.0 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
| 0.2 | 1.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.0 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |