Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G32870
Z-value: 0.77
Transcription factors associated with AT1G32870
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G32870
|
AT1G32870 | NAC domain protein 13 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC13 | arTal_v1_Chr1_+_11911631_11911679 | 0.35 | 7.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_162905_162905 Show fit | 1.57 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 1.56 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_4183354_4183354 Show fit | 1.40 |
AT5G13170.1
|
senescence-associated gene 29 |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 1.38 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 1.34 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr5_+_1153740_1153740 Show fit | 1.24 |
AT5G04200.1
|
metacaspase 9 |
|
| arTal_v1_Chr3_+_10520443_10520502 Show fit | 1.23 |
AT3G28210.1
AT3G28210.2 |
zinc finger (AN1-like) family protein |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 1.20 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 1.15 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr4_-_10182264_10182264 Show fit | 1.11 |
AT4G18425.1
|
transmembrane protein, putative (DUF679) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G32870
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.5 | GO:0071456 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.6 | 3.4 | GO:0009413 | response to flooding(GO:0009413) |
| 0.2 | 2.4 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.0 | 2.3 | GO:0006874 | cellular calcium ion homeostasis(GO:0006874) |
| 0.0 | 2.3 | GO:0007568 | aging(GO:0007568) |
| 0.3 | 2.2 | GO:0016103 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.7 | 2.0 | GO:0016118 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.0 | 2.0 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.2 | 1.9 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 0.1 | 1.8 | GO:0046219 | tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 2.3 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 1.9 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.5 | 1.6 | GO:0005813 | centrosome(GO:0005813) centriole(GO:0005814) |
| 0.3 | 1.6 | GO:0005776 | autophagosome(GO:0005776) |
| 0.0 | 1.6 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 1.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.3 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.0 | 1.3 | GO:0015629 | actin cytoskeleton(GO:0015629) |
| 0.0 | 1.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.0 | 2.7 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.1 | 2.4 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.6 | 2.3 | GO:0004048 | anthranilate phosphoribosyltransferase activity(GO:0004048) |
| 0.3 | 2.3 | GO:0052634 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.1 | 2.2 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.2 | 2.1 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 2.1 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.2 | 2.0 | GO:0008970 | phosphatidylcholine 1-acylhydrolase activity(GO:0008970) |
| 0.2 | 2.0 | GO:0050373 | UDP-arabinose 4-epimerase activity(GO:0050373) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.0 | 0.1 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.0 | 0.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 1.3 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 0.9 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.6 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 0.2 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.0 | 0.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |