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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G32150
Z-value: 0.77
Transcription factors associated with AT1G32150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G32150
|
AT1G32150 | basic region/leucine zipper transcription factor 68 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP68 | arTal_v1_Chr1_+_11565494_11565494 | 0.81 | 1.6e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 4.24 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 3.91 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 3.80 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 3.60 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 3.52 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 3.47 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 3.46 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 3.41 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 3.40 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 3.32 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G32150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 41.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 19.7 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 13.5 | GO:0050832 | defense response to fungus(GO:0050832) |
| 0.6 | 11.4 | GO:0015996 | chlorophyll catabolic process(GO:0015996) |
| 0.3 | 11.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 10.7 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 1.5 | 9.3 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.9 | 9.1 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.5 | 9.0 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.1 | 8.5 | GO:0010200 | response to chitin(GO:0010200) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 15.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 10.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 8.3 | GO:0016592 | mediator complex(GO:0016592) |
| 0.4 | 6.3 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.3 | 5.7 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.3 | 5.6 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 5.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.9 | 5.2 | GO:0005776 | autophagosome(GO:0005776) |
| 0.1 | 5.1 | GO:0005770 | late endosome(GO:0005770) |
| 0.0 | 4.8 | GO:0044217 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 22.0 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 15.8 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.1 | 15.4 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.1 | 14.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 12.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 10.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 10.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 9.8 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 1.2 | 8.2 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.3 | 7.8 | GO:0004568 | chitinase activity(GO:0004568) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.4 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 2.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 1.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.1 | 1.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.3 | 0.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.3 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 1.7 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 1.3 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 0.3 | 1.0 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.3 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.8 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.7 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.2 | 0.6 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 0.2 | 0.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |