GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G31140
|
AT1G31140 | GORDITA |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
GOA | arTal_v1_Chr1_+_11117941_11117993 | -0.47 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_-_4090857_4090857 Show fit | 1.70 |
AT1G12090.1
|
extensin-like protein |
|
arTal_v1_Chr1_-_24606722_24606722 Show fit | 1.56 |
AT1G66100.1
|
Plant thionin |
|
arTal_v1_Chr3_-_197974_197974 Show fit | 1.44 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
arTal_v1_Chr3_-_198160_198160 Show fit | 1.41 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
arTal_v1_Chr3_-_198664_198664 Show fit | 1.40 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
arTal_v1_Chr4_-_18098633_18098633 Show fit | 1.39 |
AT4G38770.1
|
proline-rich protein 4 |
|
arTal_v1_Chr4_-_17777445_17777445 Show fit | 1.37 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
arTal_v1_Chr5_+_4757856_4757972 Show fit | 1.37 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
arTal_v1_Chr3_+_17228642_17228642 Show fit | 1.36 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
arTal_v1_Chr2_+_16476198_16476216 Show fit | 1.35 |
AT2G39470.1
AT2G39470.2 AT2G39470.3 |
PsbP-like protein 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.8 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
0.5 | 6.1 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
0.1 | 5.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
0.1 | 4.8 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
0.5 | 4.1 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
0.1 | 4.0 | GO:0006284 | base-excision repair(GO:0006284) |
0.2 | 3.6 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
0.1 | 3.6 | GO:0015979 | photosynthesis(GO:0015979) |
0.1 | 3.4 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
0.1 | 2.9 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 32.3 | GO:0005576 | extracellular region(GO:0005576) |
0.1 | 29.8 | GO:0031976 | plastid thylakoid(GO:0031976) |
0.1 | 22.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
0.1 | 16.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.1 | 15.9 | GO:0048046 | apoplast(GO:0048046) |
0.2 | 8.7 | GO:0010319 | stromule(GO:0010319) |
0.2 | 5.0 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
0.1 | 4.9 | GO:0009579 | thylakoid(GO:0009579) |
0.0 | 3.7 | GO:0009941 | chloroplast envelope(GO:0009941) |
0.2 | 3.6 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 9.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.1 | 5.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.0 | 5.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.0 | 4.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 3.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
0.4 | 3.4 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
0.1 | 3.0 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
0.1 | 2.8 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
0.0 | 2.8 | GO:0008134 | transcription factor binding(GO:0008134) |
0.1 | 2.6 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 5.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.3 | 1.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 1.1 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.3 | 0.9 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.1 | 0.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.1 | 0.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 0.5 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 0.5 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 0.3 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 8.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.3 | 0.9 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
0.3 | 0.8 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
0.3 | 0.8 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
0.1 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.1 | 0.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.1 | 0.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 0.4 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 0.4 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |