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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G30650
Z-value: 0.90
Transcription factors associated with AT1G30650
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G30650
|
AT1G30650 | WRKY DNA-binding protein 14 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY14 | arTal_v1_Chr1_+_10868218_10868218 | -0.48 | 9.1e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 5.36 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 4.22 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 3.64 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 3.50 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_10375599_10375599 Show fit | 3.47 |
AT1G29670.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 3.22 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 3.22 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_26767599_26767599 Show fit | 3.09 |
AT5G67070.1
|
ralf-like 34 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 3.07 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr1_+_6409655_6409655 Show fit | 2.82 |
AT1G18620.3
AT1G18620.1 AT1G18620.4 |
LONGIFOLIA protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G30650
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 18.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.1 | 9.6 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.4 | 8.8 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.1 | 6.3 | GO:0010102 | post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102) |
| 0.1 | 6.3 | GO:0009808 | lignin metabolic process(GO:0009808) |
| 0.5 | 5.3 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 0.3 | 5.2 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 0.4 | 5.0 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 4.9 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.6 | 4.6 | GO:0043489 | RNA stabilization(GO:0043489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 35.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 23.2 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 23.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 10.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 8.9 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 8.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 6.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.9 | GO:0015934 | large ribosomal subunit(GO:0015934) |
| 0.2 | 4.8 | GO:0009986 | cell surface(GO:0009986) |
| 0.1 | 4.4 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.2 | 12.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 11.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.8 | 9.0 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.3 | 8.7 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.9 | 7.7 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.3 | 7.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.4 | 7.3 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 7.1 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 6.3 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 3.0 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.3 | 2.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.4 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.0 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 1.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.2 | 1.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 1.0 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 0.2 | 0.9 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.2 | 0.8 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.2 | 0.7 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |