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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G29860
Z-value: 0.70
Transcription factors associated with AT1G29860
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G29860
|
AT1G29860 | WRKY DNA-binding protein 71 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY71 | arTal_v1_Chr1_+_10454433_10454433 | -0.25 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_24608605_24608605 Show fit | 2.19 |
AT5G61160.1
|
anthocyanin 5-aromatic acyltransferase 1 |
|
| arTal_v1_Chr4_+_8294446_8294452 Show fit | 1.95 |
AT4G14400.2
AT4G14400.3 |
ankyrin repeat family protein |
|
| arTal_v1_Chr4_+_8294165_8294165 Show fit | 1.80 |
AT4G14400.1
|
ankyrin repeat family protein |
|
| arTal_v1_Chr1_+_1882907_1882907 Show fit | 1.58 |
AT1G06160.1
|
octadecanoid-responsive AP2/ERF 59 |
|
| arTal_v1_Chr1_+_21207537_21207537 Show fit | 1.51 |
AT1G56600.1
|
galactinol synthase 2 |
|
| arTal_v1_Chr1_+_11532199_11532199 Show fit | 1.32 |
AT1G32060.1
|
phosphoribulokinase |
|
| arTal_v1_Chr1_-_29519323_29519323 Show fit | 1.32 |
AT1G78460.1
|
SOUL heme-binding family protein |
|
| arTal_v1_Chr1_+_7949476_7949476 Show fit | 1.29 |
AT1G22500.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr5_+_22038165_22038165 Show fit | 1.26 |
AT5G54270.1
|
light-harvesting chlorophyll B-binding protein 3 |
|
| arTal_v1_Chr3_-_18294621_18294621 Show fit | 1.26 |
AT3G49340.1
|
Cysteine proteinases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G29860
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.4 | GO:0019253 | carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253) |
| 0.4 | 4.2 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 0.3 | 3.5 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.3 | 3.0 | GO:0010188 | response to microbial phytotoxin(GO:0010188) |
| 0.0 | 3.0 | GO:0048544 | recognition of pollen(GO:0048544) |
| 0.2 | 2.9 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.4 | 2.5 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.1 | 2.4 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.0 | 2.4 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 2.3 | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance(GO:0009861) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.8 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 11.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 9.9 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 8.2 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 6.2 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 5.8 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.1 | 3.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.3 | 2.8 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 1.7 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.1 | 1.4 | GO:0009574 | preprophase band(GO:0009574) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.4 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.0 | 6.9 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.0 | 4.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 3.9 | GO:0043531 | ADP binding(GO:0043531) |
| 0.6 | 3.5 | GO:0004838 | L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547) |
| 0.1 | 3.5 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 2.6 | GO:0003756 | protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864) |
| 0.1 | 2.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 2.4 | GO:0043621 | protein self-association(GO:0043621) |
| 0.2 | 1.9 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.1 | 0.2 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.0 | 0.2 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.7 | 2.0 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.1 | 1.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 1.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 1.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.4 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.4 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.1 | 0.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |