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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G29160
Z-value: 1.35
Transcription factors associated with AT1G29160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G29160
|
AT1G29160 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G29160 | arTal_v1_Chr1_-_10184512_10184512 | -0.22 | 2.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 5.92 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 5.20 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 5.10 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.19 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 4.17 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 3.90 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 3.75 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 3.71 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 3.60 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 3.51 |
AT3G01500.1
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G29160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 22.5 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.9 | 16.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 15.0 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 14.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.1 | 13.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.2 | 8.7 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.2 | 8.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 8.2 | GO:0010020 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.3 | 7.8 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.2 | 7.7 | GO:0042335 | cuticle development(GO:0042335) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 79.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 55.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 38.7 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.2 | 33.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 24.4 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 21.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.5 | 19.6 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 18.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 11.7 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 1.0 | 7.7 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 23.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 15.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.4 | 13.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 11.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 11.4 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.1 | 10.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 10.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.5 | 10.3 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.4 | 9.8 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 9.8 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 13.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.8 | 3.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 2.5 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.4 | 1.6 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.3 | 1.0 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 1.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 0.8 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.8 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.7 | PID P53 REGULATION PATHWAY | p53 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 13.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.6 | 3.1 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 3.0 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.3 | 1.9 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.4 | 1.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.3 | 1.6 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.4 | 1.5 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.4 | 1.1 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 1.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 1.0 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |