Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G28370
Z-value: 1.26
Transcription factors associated with AT1G28370
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G28370
|
AT1G28370 | ERF domain protein 11 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF11 | arTal_v1_Chr1_-_9956960_9956980 | 0.80 | 3.6e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 8.60 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 6.11 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 5.62 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 5.57 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 5.44 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 5.38 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 5.22 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr3_+_9208861_9208941 Show fit | 4.96 |
AT3G25290.1
AT3G25290.2 |
Auxin-responsive family protein |
|
| arTal_v1_Chr4_-_7026224_7026224 Show fit | 4.51 |
AT4G11650.1
|
osmotin 34 |
|
| arTal_v1_Chr5_-_8659352_8659352 Show fit | 4.48 |
AT5G25110.1
|
CBL-interacting protein kinase 25 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G28370
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 26.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 25.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.4 | 18.3 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.4 | 17.6 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 17.2 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.3 | 14.1 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.1 | 13.9 | GO:0010228 | vegetative to reproductive phase transition of meristem(GO:0010228) |
| 0.3 | 11.3 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.3 | 11.2 | GO:0009625 | response to insect(GO:0009625) |
| 0.7 | 10.4 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 30.2 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.3 | 12.0 | GO:0005764 | lysosome(GO:0005764) |
| 0.6 | 8.6 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 7.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 5.6 | GO:0033646 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.3 | 5.3 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 5.3 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 5.1 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 4.8 | GO:0016592 | mediator complex(GO:0016592) |
| 0.3 | 4.7 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 29.5 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 24.2 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 15.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 14.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 14.1 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 11.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 1.1 | 10.3 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.1 | 10.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.5 | 8.9 | GO:0015248 | sterol transporter activity(GO:0015248) |
| 0.7 | 8.1 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.3 | 0.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 0.8 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.1 | 0.7 | PID P73PATHWAY | p73 transcription factor network |
| 0.4 | 0.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 0.3 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.7 | 2.9 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.3 | 2.1 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.3 | 1.5 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.2 | 1.3 | REACTOME NUCLEOTIDE EXCISION REPAIR | Genes involved in Nucleotide Excision Repair |
| 0.3 | 1.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.4 | 1.1 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.3 | 1.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |