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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G28160
Z-value: 0.62
Transcription factors associated with AT1G28160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G28160
|
AT1G28160 | Integrase-type DNA-binding superfamily protein |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 2.04 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr1_-_5645443_5645443 Show fit | 2.03 |
AT1G16510.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_1882907_1882907 Show fit | 2.02 |
AT1G06160.1
|
octadecanoid-responsive AP2/ERF 59 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 1.96 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_+_18634546_18634546 Show fit | 1.91 |
AT3G50260.1
|
cooperatively regulated by ethylene and jasmonate 1 |
|
| arTal_v1_Chr1_+_6100964_6101015 Show fit | 1.89 |
AT1G17745.1
AT1G17745.2 |
D-3-phosphoglycerate dehydrogenase |
|
| arTal_v1_Chr1_+_20876440_20876440 Show fit | 1.81 |
AT1G55850.1
|
cellulose synthase like E1 |
|
| arTal_v1_Chr1_-_30142697_30142697 Show fit | 1.74 |
AT1G80130.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr4_+_17440177_17440177 Show fit | 1.60 |
AT4G36990.1
|
heat shock factor 4 |
|
| arTal_v1_Chr4_-_12890261_12890262 Show fit | 1.54 |
AT4G25110.2
AT4G25110.1 |
metacaspase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G28160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.3 | 2.6 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.0 | 2.4 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.4 | 2.2 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
| 0.0 | 2.2 | GO:0006090 | pyruvate metabolic process(GO:0006090) |
| 0.1 | 2.0 | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance(GO:0009861) |
| 0.3 | 1.9 | GO:1900367 | positive regulation of defense response to insect(GO:1900367) |
| 0.0 | 1.9 | GO:0010941 | regulation of cell death(GO:0010941) |
| 0.1 | 1.8 | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864) |
| 0.1 | 1.8 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.6 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 1.9 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 1.7 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.3 | GO:0044421 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.0 | 1.1 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.1 | 1.0 | GO:1903561 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.1 | 0.9 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
| 0.0 | 0.9 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
| 0.3 | 0.8 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.1 | 0.7 | GO:0038201 | TORC1 complex(GO:0031931) TOR complex(GO:0038201) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.1 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.0 | 3.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 2.9 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 2.6 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.0 | 2.3 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.6 | 2.2 | GO:0004617 | phosphoglycerate dehydrogenase activity(GO:0004617) |
| 0.3 | 2.2 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.1 | 1.8 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.3 | 1.3 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.1 | 1.3 | GO:0015112 | nitrate transmembrane transporter activity(GO:0015112) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |