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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G28160

Z-value: 0.62

Transcription factors associated with AT1G28160

Gene Symbol Gene ID Gene Info
AT1G28160
AT1G28160 Integrase-type DNA-binding superfamily protein

Activity profile of AT1G28160 motif

Sorted Z-values of AT1G28160 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_2699257 2.04 AT3G08860.2
PYD4
PYRIMIDINE 4
Chr1_-_5645443 2.03 AT1G16510.1
AT1G16510
SAUR-like auxin-responsive protein family
Chr1_+_1882907 2.02 AT1G06160.1
ORA59
octadecanoid-responsive AP2/ERF 59
Chr3_-_2699420 1.96 AT3G08860.1
PYD4
PYRIMIDINE 4
Chr3_+_18634546 1.91 AT3G50260.1
CEJ1
cooperatively regulated by ethylene and jasmonate 1
Chr1_+_6100964 1.89 AT1G17745.1
AT1G17745.2
PGDH
D-3-phosphoglycerate dehydrogenase
Chr1_+_20876440 1.81 AT1G55850.1
CSLE1
cellulose synthase like E1
Chr1_-_30142697 1.74 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_17440177 1.60 AT4G36990.1
HSF4
heat shock factor 4
Chr4_-_12890261 1.54 AT4G25110.2
AT4G25110.1
MC2
metacaspase 2
Chr3_-_1776840 1.47 AT3G05937.1
AT3G05937
hypothetical protein
Chr1_+_8164959 1.47 AT1G23040.3
AT1G23040.2
AT1G23040
hydroxyproline-rich glycoprotein family protein
Chr4_-_9421857 1.42 AT4G16750.1
AT4G16750
Integrase-type DNA-binding superfamily protein
Chr1_+_8164782 1.39 AT1G23040.1
AT1G23040
hydroxyproline-rich glycoprotein family protein
Chr1_-_17266724 1.37 AT1G46768.3
AT1G46768.2
AT1G46768.1
RAP2.1
related to AP2 1
Chr1_-_9956960 1.35 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
Chr5_-_24317935 1.33 AT5G60460.2
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
Chr4_+_7239200 1.33 AT4G12080.1
AHL1
AT-hook motif nuclear-localized protein 1
Chr1_+_4416315 1.33 AT1G12940.1
NRT2.5
nitrate transporter2.5
Chr4_+_9171280 1.29 AT4G16190.1
AT4G16190
Papain family cysteine protease
Chr4_+_18530318 1.27 AT4G39955.1
AT4G39955
alpha/beta-Hydrolases superfamily protein
Chr5_-_24318241 1.26 AT5G60460.1
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
Chr2_-_15151575 1.23 AT2G36080.3
AT2G36080.2
AT2G36080.4
AT2G36080.1
ABS2
AP2/B3-like transcriptional factor family protein
Chr5_+_26772644 1.20 AT5G67080.1
MAPKKK19
mitogen-activated protein kinase kinase kinase 19
Chr1_-_19690589 1.18 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr1_+_5090809 1.16 AT1G14780.1
AT1G14780
MAC/Perforin domain-containing protein
Chr1_-_24362054 1.16 AT1G65520.1
ECI1
delta(3), delta(2)-enoyl CoA isomerase 1
Chr3_-_18373147 1.15 AT3G49570.1
LSU3
response to low sulfur 3
Chr5_-_19977620 1.14 AT5G49280.1
AT5G49280
hydroxyproline-rich glycoprotein family protein
Chr2_-_13613573 1.14 AT2G31990.1
AT2G31990.3
AT2G31990.2
AT2G31990
Exostosin family protein
Chr4_-_8870801 1.13 AT4G15530.7
AT4G15530.6
AT4G15530.5
AT4G15530.3
AT4G15530.4
AT4G15530.1
PPDK
pyruvate orthophosphate dikinase
Chr5_-_213472 1.12 AT5G01540.1
LECRKA4.1
lectin receptor kinase a4.1
Chr1_+_8549191 1.11 AT1G24150.2
AT1G24150.1
FH4
formin homologue 4
Chr3_+_19431095 1.11 AT3G52430.1
PAD4
alpha/beta-Hydrolases superfamily protein
Chr3_+_16383595 1.09 AT3G44880.1
ACD1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr5_-_19172956 1.05 AT5G47220.1
ERF2
ethylene responsive element binding factor 2
Chr4_+_12977192 1.05 AT4G25390.1
AT4G25390.2
AT4G25390
Protein kinase superfamily protein
Chr3_+_19534585 1.04 AT3G52710.1
AT3G52710
hypothetical protein
Chr4_-_8869319 1.03 AT4G15530.2
PPDK
pyruvate orthophosphate dikinase
Chr4_+_9385119 1.01 AT4G16670.2
AT4G16670.3
AT4G16670.1
AT4G16670
auxin canalization protein (DUF828)
Chr5_-_25764420 0.98 AT5G64430.1
AT5G64430
Octicosapeptide/Phox/Bem1p family protein
Chr1_-_2152541 0.98 AT1G07000.1
EXO70B2
exocyst subunit exo70 family protein B2
Chr5_-_1994824 0.97 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABCG22
ABC-2 type transporter family protein
Chr2_-_11685342 0.96 AT2G27310.1
AT2G27310
F-box family protein
Chr5_+_864261 0.93 AT5G03460.1
AT5G03460
transmembrane protein
Chr3_-_20366840 0.92 AT3G54960.2
AT3G54960.1
PDIL1-3
PDI-like 1-3
Chr1_-_5765798 0.92 AT1G16850.1
AT1G16850
transmembrane protein
Chr1_+_29502506 0.91 AT1G78410.1
AT1G78410.2
AT1G78410
VQ motif-containing protein
Chr4_-_13016235 0.91 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
Chr3_+_4049309 0.91 AT3G12740.1
ALIS1
ALA-interacting subunit 1
Chr5_-_17831336 0.91 AT5G44260.1
AT5G44260
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr5_+_25703649 0.91 AT5G64260.1
EXL2
EXORDIUM like 2
Chr1_-_11595982 0.90 AT1G32190.2
AT1G32190.1
AT1G32190
alpha/beta-Hydrolases superfamily protein
Chr5_+_1551298 0.90 AT5G05230.1
AT5G05230
RING/U-box superfamily protein
Chr2_+_15592552 0.90 AT2G37110.1
AT2G37110
PLAC8 family protein
Chr1_-_27640643 0.88 AT1G73500.1
MKK9
MAP kinase kinase 9
Chr2_-_9266393 0.85 AT2G21660.2
GRP7
cold, circadian rhythm, and rna binding 2
Chr2_-_9266557 0.84 AT2G21660.1
GRP7
cold, circadian rhythm, and rna binding 2
Chr1_-_12516521 0.81 AT1G34315.1
AT1G34315
transmembrane protein
Chr2_-_9706217 0.81 AT2G22800.1
HAT9
Homeobox-leucine zipper protein family
Chr1_+_28400439 0.81 AT1G75630.1
AT1G75630.2
AVA-P4
vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
Chr1_-_18477643 0.81 AT1G49900.1
AT1G49900
C2H2 type zinc finger transcription factor family
Chr5_-_315405 0.80 AT5G01820.1
SR1
serine/threonine protein kinase 1
Chr2_-_9527845 0.80 AT2G22430.1
HB6
homeobox protein 6
Chr3_-_9464676 0.79 AT3G25870.1
AT3G25870
hypothetical protein
Chr2_+_17360374 0.78 AT2G41640.1
AT2G41640.3
AT2G41640.2
AT2G41640
Glycosyltransferase family 61 protein
Chr3_-_1791887 0.78 AT3G05970.1
LACS6
long-chain acyl-CoA synthetase 6
Chr1_+_22893101 0.78 AT1G61930.1
AT1G61930
senescence regulator (Protein of unknown function, DUF584)
Chr1_+_28070295 0.77 AT1G74710.1
AT1G74710.2
EDS16
ADC synthase superfamily protein
Chr1_+_9951762 0.77 AT1G28360.1
ERF12
ERF domain protein 12
Chr1_+_11181504 0.76 AT1G31280.1
AGO2
Argonaute family protein
Chr5_-_3447278 0.76 AT5G10930.1
CIPK5
CBL-interacting protein kinase 5
Chr4_+_13847549 0.76 AT4G27780.2
AT4G27780.1
ACBP2
acyl-CoA binding protein 2
Chr3_+_8152038 0.75 AT3G22970.2
AT3G22970.1
AT3G22970
hypothetical protein (DUF506)
Chr2_+_17495506 0.74 AT2G41905.1
AT2G41905
transmembrane protein
Chr4_-_9920511 0.73 AT4G17840.1
AT4G17840
CAAX protease self-immunity protein
Chr5_+_1145431 0.73 AT5G04170.1
AT5G04170
Calcium-binding EF-hand family protein
Chr5_-_23725585 0.73 AT5G58730.1
Mik
pfkB-like carbohydrate kinase family protein
Chr1_+_23740493 0.73 AT1G63980.1
AT1G63980.2
AT1G63980
D111/G-patch domain-containing protein
Chr3_+_5121303 0.72 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
Chr5_+_3606385 0.72 AT5G11310.1
AT5G11310
Pentatricopeptide repeat (PPR) superfamily protein
Chr4_+_17307709 0.72 AT4G36720.1
HVA22K
HVA22-like protein K
Chr3_+_590425 0.72 AT3G02740.1
AT3G02740.2
AT3G02740
Eukaryotic aspartyl protease family protein
Chr4_-_15339613 0.72 AT4G31670.1
UBP18
ubiquitin-specific protease 18
Chr5_+_338896 0.72 AT5G01880.1
AT5G01880
RING/U-box superfamily protein
Chr1_-_8983314 0.71 AT1G25560.1
TEM1
AP2/B3 transcription factor family protein
Chr1_-_29465249 0.70 AT1G78310.1
AT1G78310
VQ motif-containing protein
Chr1_-_5443911 0.70 AT1G15800.1
AT1G15800
hypothetical protein
Chr5_+_3509833 0.69 AT5G11060.1
KNAT4
homeobox protein knotted-1-like 4
Chr2_-_16042383 0.69 AT2G38290.2
AT2G38290.1
AMT2
ammonium transporter 2
Chr3_-_10977527 0.68 AT3G28950.1
AT3G28950
AIG2-like (avirulence induced gene) family protein
Chr4_+_17130246 0.68 AT4G36210.2
AT4G36210.1
AT4G36210.3
AT4G36210
transmembrane/coiled-coil protein (DUF726)
Chr5_-_4722371 0.67 AT5G14640.1
SK13
shaggy-like kinase 13
Chr2_+_621058 0.67 AT2G02370.1
AT2G02370.3
AT2G02370.2
AT2G02370
SNARE associated Golgi protein family
Chr3_-_2695400 0.67 AT3G08850.1
RAPTOR1
Regulatory-associated protein of TOR 1
Chr1_-_22595338 0.67 AT1G61260.1
AT1G61260
cotton fiber (DUF761)
Chr2_-_18519731 0.66 AT2G44910.1
HB4
homeobox-leucine zipper protein 4
Chr4_+_13184114 0.66 AT4G25970.1
PSD3
phosphatidylserine decarboxylase 3
Chr4_-_15754845 0.66 AT4G32650.3
AT4G32650.2
KAT3
potassium channel protein
Chr5_-_4722048 0.66 AT5G14640.2
SK13
shaggy-like kinase 13
Chr2_-_9767 0.65 AT2G01023.1
AT2G01023
hypothetical protein
Chr2_+_8998450 0.64 AT2G20920.1
AT2G20920
chaperone (DUF3353)
Chr3_+_6536534 0.64 AT3G18950.1
AT3G18950
Transducin/WD40 repeat-like superfamily protein
Chr2_-_17422747 0.64 AT2G41750.1
AT2G41750
DTW domain-containing protein
Chr3_+_17558793 0.64 AT3G47620.1
TCP14
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Chr3_+_6820926 0.63 AT3G19640.1
MGT4
magnesium transporter 4
Chr1_-_2467058 0.62 AT1G07950.1
AT1G07950.2
MED22B
Surfeit locus protein 5 subunit 22 of Mediator complex
Chr1_-_11877387 0.62 AT1G32790.2
CID11
CTC-interacting domain 11
Chr1_+_474373 0.62 AT1G02370.1
AT1G02370
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_11877549 0.62 AT1G32790.1
CID11
CTC-interacting domain 11
Chr1_-_8266048 0.61 AT1G23300.1
AT1G23300
MATE efflux family protein
Chr5_-_4474530 0.61 AT5G13860.1
ELC-Like
ELCH-like protein
Chr5_+_16281394 0.61 AT5G40650.1
AT5G40650.2
SDH2-2
succinate dehydrogenase 2-2
Chr1_-_1375742 0.60 AT1G04870.1
AT1G04870.2
PRMT10
protein arginine methyltransferase 10
Chr1_+_22409298 0.60 AT1G60870.1
MEE9
maternal effect embryo arrest 9
Chr5_+_25721733 0.60 AT5G64310.1
AGP1
arabinogalactan protein 1
Chr1_+_17432433 0.60 AT1G47500.1
AT1G47500.2
RBP47C'
RNA-binding protein 47C'
Chr1_+_20912116 0.60 AT1G55920.1
SERAT2%3B1
serine acetyltransferase 2;1
Chr5_+_22388782 0.60 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr4_+_1041086 0.59 AT4G02360.1
AT4G02360
transmembrane protein, putative (Protein of unknown function, DUF538)
Chr4_-_15507176 0.59 AT4G32070.2
AT4G32070.1
Phox4
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Chr5_-_37999 0.59 AT5G01100.1
FRB1
O-fucosyltransferase family protein
Chr3_+_5341356 0.58 AT3G15780.1
AT3G15780
transmembrane protein
Chr5_+_9149073 0.58 AT5G26180.1
AT5G26180.2
AT5G26180.4
AT5G26180.3
AT5G26180.5
AT5G26180
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_19210849 0.58 AT3G51790.1
G1
transmembrane protein G1P-related 1
Chr4_-_16659486 0.57 AT4G34980.1
SLP2
subtilisin-like serine protease 2
Chr3_+_6251315 0.57 AT3G18230.1
AT3G18230
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_14211693 0.57 AT2G33550.1
AT2G33550
Homeodomain-like superfamily protein
Chr5_+_22388521 0.57 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr2_+_6797111 0.57 AT2G15580.3
AT2G15580.1
AT2G15580
RING/U-box superfamily protein
Chr1_+_18035967 0.56 AT1G48750.1
AT1G48750
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_6797335 0.56 AT2G15580.2
AT2G15580
RING/U-box superfamily protein
Chr2_+_1156593 0.55 AT2G03800.2
AT2G03800.1
GEK1
D-aminoacyl-tRNA deacylase
Chr2_-_16115204 0.55 AT2G38490.1
CIPK22
CBL-interacting Serine/Threonine-kinase
Chr2_-_10672892 0.55 AT2G25090.1
CIPK16
CBL-interacting protein kinase 16
Chr2_+_7564240 0.55 AT2G17420.1
AT2G17420.2
NTRA
NADPH-dependent thioredoxin reductase A
Chr4_+_1042235 0.55 AT4G02370.1
AT4G02370
pectinesterase (Protein of unknown function, DUF538)
Chr1_-_22794714 0.54 AT1G61730.1
AT1G61730
DNA-binding storekeeper protein-related transcriptional regulator
Chr2_+_9006610 0.54 AT2G20960.3
AT2G20960.2
AT2G20960.1
AT2G20960.4
pEARLI4
phospholipase-like protein (PEARLI 4) family protein
Chr1_-_23801720 0.54 AT1G64110.1
AT1G64110.3
AT1G64110.2
DAA1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_2560328 0.54 AT5G07990.1
TT7
Cytochrome P450 superfamily protein
Chr2_+_114926 0.53 AT2G01190.1
PDE331
Octicosapeptide/Phox/Bem1p family protein
Chr1_+_25788305 0.53 AT1G68690.2
AT1G68690.1
AT1G68690.3
PERK9
Protein kinase superfamily protein
Chr1_+_11844660 0.53 AT1G32740.2
AT1G32740.1
AT1G32740.3
AT1G32740
SBP (S-ribonuclease binding protein) family protein
Chr1_-_20415287 0.53 AT1G54690.1
GAMMA-H2AX
gamma histone variant H2AX
Chr5_+_6017797 0.53 AT5G18210.1
AT5G18210.2
AT5G18210
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_20544857 0.52 AT5G50450.1
AT5G50450
HCP-like superfamily protein with MYND-type zinc finger
Chr1_+_28163344 0.52 AT1G75000.1
AT1G75000
GNS1/SUR4 membrane protein family
Chr3_-_10941833 0.52 AT3G28920.1
HB34
homeobox protein 34
Chr3_+_4036945 0.52 AT3G12700.1
AT3G12700.3
AT3G12700.2
NANA
Eukaryotic aspartyl protease family protein
Chr3_-_7445303 0.51 AT3G21215.2
AT3G21215.3
AT3G21215.4
AT3G21215.1
AT3G21215
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_-_5618322 0.51 AT3G16510.1
AT3G16510
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_+_4756057 0.51 AT5G14730.1
AT5G14730
hypothetical protein
Chr3_-_5445329 0.51 AT3G16050.1
PDX1.2
pyridoxine biosynthesis 1.2
Chr3_+_2819040 0.51 AT3G09180.2
AT3G09180.1
AT3G09180.3
AT3G09180
mediator of RNA polymerase II transcription subunit
Chr1_+_28185504 0.51 AT1G75080.1
AT1G75080.2
BZR1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr2_+_14685170 0.51 AT2G34810.1
AT2G34810
FAD-binding Berberine family protein
Chr4_+_16997091 0.50 AT4G35890.2
AT4G35890.1
LARP1c
winged-helix DNA-binding transcription factor family protein
Chr5_-_8982873 0.50 AT5G25800.2
AT5G25800.1
AT5G25800
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_-_230051 0.50 AT5G01600.1
FER1
ferretin 1
Chr1_+_5867535 0.50 AT1G17160.1
AT1G17160.2
AT1G17160
pfkB-like carbohydrate kinase family protein
Chr3_-_3663986 0.50 AT3G11591.1
AT3G11591
bric-a-brac protein
Chr1_+_1469541 0.50 AT1G05100.1
MAPKKK18
mitogen-activated protein kinase kinase kinase 18
Chr4_+_17388649 0.50 AT4G36900.1
RAP2.10
related to AP2 10
Chr4_+_9759203 0.49 AT4G17500.1
ERF-1
ethylene responsive element binding factor 1
Chr3_+_21384146 0.49 AT3G57690.1
AGP23
arabinogalactan protein 23
Chr4_-_9227953 0.49 AT4G16330.2
AT4G16330.1
AT4G16330
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_7946285 0.48 AT5G23575.1
AT5G23575
Transmembrane CLPTM1 family protein
Chr2_-_10988924 0.48 AT2G25760.2
AT2G25760
Protein kinase family protein
Chr3_+_17867131 0.48 AT3G48240.1
AT3G48240
Octicosapeptide/Phox/Bem1p family protein
Chr3_+_22331427 0.48 AT3G60410.2
AT3G60410.1
AT3G60410.3
AT3G60410
hypothetical protein (DUF1639)
Chr3_+_1936050 0.48 AT3G06380.2
AT3G06380.1
TLP9
tubby-like protein 9
Chr3_+_6146015 0.48 AT3G17950.3
AT3G17950.1
AT3G17950.2
AT3G17950
transmembrane protein
Chr1_+_24156672 0.48 AT1G65030.1
AT1G65030
Transducin/WD40 repeat-like superfamily protein
Chr2_-_13835758 0.48 AT2G32600.1
AT2G32600
hydroxyproline-rich glycoprotein family protein
Chr5_+_26045327 0.47 AT5G65180.2
AT5G65180.1
AT5G65180
ENTH/VHS family protein
Chr1_+_20901243 0.47 AT1G55890.1
AT1G55890
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_10989117 0.47 AT2G25760.1
AT2G25760
Protein kinase family protein
Chr4_-_10576619 0.46 AT4G19390.1
AT4G19390
Uncharacterized protein family (UPF0114)
Chr1_-_30304428 0.46 AT1G80610.1
AT1G80610
hypothetical protein
Chr1_+_27784928 0.46 AT1G73880.1
UGT89B1
UDP-glucosyl transferase 89B1
Chr5_+_25692425 0.45 AT5G64230.1
AT5G64230
1,8-cineole synthase
Chr5_-_10295283 0.45 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr3_+_677240 0.45 AT3G03000.1
AT3G03000
EF hand calcium-binding protein family
Chr5_+_3931349 0.45 AT5G12170.2
AT5G12170.3
CLT3
CRT (chloroquine-resistance transporter)-like transporter 3
Chr5_+_3831500 0.45 AT5G11890.1
EMB3135
harpin-induced protein
Chr1_+_15936156 0.45 AT1G42480.1
AT1G42480.2
AT1G42480.3
AT1G42480
TLR4 regulator/MIR-interacting MSAP protein
Chr5_+_21514896 0.44 AT5G53060.1
AT5G53060.3
AT5G53060.2
RCF3
RNA-binding KH domain-containing protein
Chr5_+_24480291 0.44 AT5G60850.1
OBP4
OBF binding protein 4
Chr3_+_19323332 0.44 AT3G52105.1
AT3G52105
DIS3-exonuclease-like protein
Chr3_-_20436453 0.44 AT3G55130.1
ABCG19
white-brown complex homolog 19
Chr2_+_15928591 0.44 AT2G38070.1
AT2G38070
LOW protein: UPF0503-like protein, putative (DUF740)
Chr5_+_20650086 0.44 AT5G50780.2
AT5G50780.3
AT5G50780.1
AT5G50780
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Chr4_-_13769961 0.44 AT4G27585.1
AT4G27585
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr4_+_2471866 0.44 AT4G04885.1
PCFS4
PCF11P-similar protein 4
Chr1_+_2238017 0.44 AT1G07280.1
AT1G07280.2
AT1G07280.4
AT1G07280.3
AT1G07280
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_18112458 0.44 AT1G48960.1
AT1G48960
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr3_+_10782095 0.44 AT3G28720.2
AT3G28720.1
AT3G28720
transmembrane protein
Chr3_+_17935256 0.44 AT3G48430.1
REF6
relative of early flowering 6
Chr4_-_10491718 0.44 AT4G19185.2
AT4G19185.1
UMAMIT2
nodulin MtN21 /EamA-like transporter family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G28160

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.2 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.3 1.9 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.3 2.6 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.3 0.8 GO:0010288 response to lead ion(GO:0010288)
0.2 0.7 GO:0015696 ammonium transport(GO:0015696)
0.2 0.7 GO:0010507 negative regulation of autophagy(GO:0010507)
0.2 0.6 GO:0035246 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.2 0.6 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.2 0.7 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.2 0.8 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.2 1.2 GO:0060866 leaf abscission(GO:0060866)
0.1 1.3 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 0.4 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.1 1.0 GO:0010148 transpiration(GO:0010148)
0.1 0.4 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.1 1.8 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.1 0.6 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.1 0.5 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 0.4 GO:0042939 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.1 0.9 GO:0017006 protein-tetrapyrrole linkage(GO:0017006)
0.1 1.0 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.3 GO:0072337 modified amino acid transport(GO:0072337)
0.1 0.9 GO:1901984 histone H3-K9 demethylation(GO:0033169) negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.1 0.5 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 2.0 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.1 0.3 GO:0055047 generative cell mitosis(GO:0055047)
0.1 0.4 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.1 0.3 GO:0006386 termination of RNA polymerase III transcription(GO:0006386)
0.1 0.3 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.1 1.2 GO:0048317 seed morphogenesis(GO:0048317)
0.1 0.5 GO:0090579 establishment of mitotic sister chromatid cohesion(GO:0034087) establishment of protein localization to chromosome(GO:0070199) rDNA condensation(GO:0070550) establishment of protein localization to chromatin(GO:0071169) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.1 0.3 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.1 0.2 GO:0046621 negative regulation of organ growth(GO:0046621)
0.1 4.0 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.1 0.3 GO:0051196 regulation of coenzyme metabolic process(GO:0051196)
0.1 0.9 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.1 0.9 GO:0015914 phospholipid transport(GO:0015914)
0.1 0.8 GO:0010161 red light signaling pathway(GO:0010161)
0.1 0.7 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.1 1.1 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.1 0.4 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.1 0.6 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.1 0.3 GO:2000574 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.1 0.9 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.1 1.8 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.1 0.6 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.1 0.2 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.1 1.4 GO:0052482 defense response by cell wall thickening(GO:0052482)
0.1 0.7 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.1 0.2 GO:0009726 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.1 0.4 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.1 1.8 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.1 0.3 GO:0006106 fumarate metabolic process(GO:0006106)
0.1 0.8 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.1 1.5 GO:0043069 negative regulation of programmed cell death(GO:0043069)
0.1 0.5 GO:0006880 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.1 0.5 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.2 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.0 0.5 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.3 GO:0071731 response to nitric oxide(GO:0071731)
0.0 0.2 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.2 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.0 0.4 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.0 0.1 GO:2000045 guard cell fate commitment(GO:0010377) regulation of stem cell population maintenance(GO:2000036) regulation of G1/S transition of mitotic cell cycle(GO:2000045) regulation of genetic imprinting(GO:2000653) regulation of stem cell differentiation(GO:2000736)
0.0 0.7 GO:0009641 shade avoidance(GO:0009641)
0.0 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.0 0.3 GO:0052386 cell wall thickening(GO:0052386)
0.0 2.4 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.4 GO:0031053 primary miRNA processing(GO:0031053)
0.0 0.2 GO:0080026 indolebutyric acid metabolic process(GO:0080024) response to indolebutyric acid(GO:0080026)
0.0 0.3 GO:0016584 nucleosome positioning(GO:0016584)
0.0 1.9 GO:0010941 regulation of cell death(GO:0010941)
0.0 0.6 GO:0006814 sodium ion transport(GO:0006814)
0.0 1.2 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.0 0.3 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.1 GO:0002697 regulation of immune effector process(GO:0002697) regulation of defense response to virus(GO:0050688)
0.0 1.2 GO:0009626 plant-type hypersensitive response(GO:0009626)
0.0 0.1 GO:0032106 positive regulation of response to extracellular stimulus(GO:0032106) positive regulation of response to nutrient levels(GO:0032109) positive regulation of cellular response to phosphate starvation(GO:0080040)
0.0 0.3 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.4 GO:0043101 IMP biosynthetic process(GO:0006188) purine nucleotide salvage(GO:0032261) purine-containing compound salvage(GO:0043101)
0.0 0.4 GO:0002238 response to molecule of fungal origin(GO:0002238)
0.0 2.2 GO:0006090 pyruvate metabolic process(GO:0006090)
0.0 0.2 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.0 0.2 GO:0072659 protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778)
0.0 0.1 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.0 0.2 GO:0080001 mucilage extrusion from seed coat(GO:0080001)
0.0 1.4 GO:0006972 hyperosmotic response(GO:0006972)
0.0 0.6 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.4 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.5 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 0.2 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.8 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.6 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.1 GO:0043966 histone H3 acetylation(GO:0043966)
0.0 0.9 GO:0034605 cellular response to heat(GO:0034605)
0.0 1.8 GO:0010200 response to chitin(GO:0010200)
0.0 0.6 GO:1903338 regulation of cell wall organization or biogenesis(GO:1903338)
0.0 0.1 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.0 0.2 GO:0032544 plastid translation(GO:0032544)
0.0 0.0 GO:0010269 response to selenium ion(GO:0010269)
0.0 0.3 GO:0010229 inflorescence development(GO:0010229)
0.0 0.4 GO:0043269 regulation of ion transport(GO:0043269)
0.0 1.0 GO:0016579 protein deubiquitination(GO:0016579)
0.0 0.1 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.0 0.9 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.6 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.8 GO:0009744 response to sucrose(GO:0009744)
0.0 0.8 GO:0071383 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) response to steroid hormone(GO:0048545) cellular response to steroid hormone stimulus(GO:0071383)
0.0 1.6 GO:0009408 response to heat(GO:0009408)
0.0 0.2 GO:0010193 response to ozone(GO:0010193)
0.0 0.2 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.9 GO:0006818 hydrogen transport(GO:0006818) proton transport(GO:0015992) hydrogen ion transmembrane transport(GO:1902600)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.6 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.3 0.8 GO:0009514 glyoxysome(GO:0009514)
0.1 0.4 GO:0005775 vacuolar lumen(GO:0005775)
0.1 0.7 GO:0038201 TORC1 complex(GO:0031931) TOR complex(GO:0038201)
0.1 0.7 GO:0017053 transcriptional repressor complex(GO:0017053)
0.1 1.0 GO:1903561 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.1 0.3 GO:0030286 dynein complex(GO:0030286)
0.1 0.6 GO:0000813 ESCRT I complex(GO:0000813)
0.1 0.3 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.1 0.3 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 0.9 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.1 0.6 GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 0.4 GO:0010445 nuclear dicing body(GO:0010445)
0.0 0.5 GO:0005844 polysome(GO:0005844)
0.0 0.2 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.4 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.0 0.9 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.6 GO:0000786 nucleosome(GO:0000786)
0.0 0.3 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.3 GO:0035267 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.7 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.3 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.5 GO:0031307 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 1.1 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.3 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 0.3 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.5 GO:0005686 U2 snRNP(GO:0005686)
0.0 1.9 GO:0042025 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 0.4 GO:0000145 exocyst(GO:0000145)
0.0 1.7 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.6 GO:0016592 mediator complex(GO:0016592)
0.0 1.3 GO:0044421 extracellular space(GO:0005615) extracellular region part(GO:0044421)
0.0 0.3 GO:0045239 tricarboxylic acid cycle enzyme complex(GO:0045239)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.2 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.4 4.1 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.3 2.2 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.3 1.2 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.3 1.3 GO:0003680 AT DNA binding(GO:0003680)
0.3 2.6 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.3 0.8 GO:0008909 isochorismate synthase activity(GO:0008909)
0.2 0.7 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.2 0.7 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.2 1.1 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.2 0.6 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.2 0.8 GO:0032791 lead ion binding(GO:0032791)
0.2 0.6 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.2 0.2 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)
0.2 0.8 GO:0035197 siRNA binding(GO:0035197)
0.1 0.4 GO:0015089 high-affinity copper ion transmembrane transporter activity(GO:0015089)
0.1 0.4 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.1 0.4 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 1.3 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 0.3 GO:0004140 dephospho-CoA kinase activity(GO:0004140)
0.1 0.3 GO:0008517 folic acid transporter activity(GO:0008517)
0.1 0.5 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.1 0.3 GO:0004438 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 0.6 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.6 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 0.4 GO:0017077 oxidative phosphorylation uncoupler activity(GO:0017077)
0.1 0.9 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 0.5 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.1 0.6 GO:0035198 miRNA binding(GO:0035198)
0.1 0.3 GO:0045502 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.1 0.9 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.1 0.8 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.1 0.3 GO:0009883 red or far-red light photoreceptor activity(GO:0009883)
0.1 0.3 GO:1901982 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.1 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.9 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.1 0.4 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.3 GO:0004333 fumarate hydratase activity(GO:0004333)
0.1 1.8 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.7 GO:0030674 protein binding, bridging(GO:0030674)
0.0 3.4 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.6 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.3 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.0 0.3 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.0 0.3 GO:0015391 nucleobase:cation symporter activity(GO:0015391)
0.0 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.9 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.9 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.9 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.2 GO:0004766 spermidine synthase activity(GO:0004766)
0.0 0.6 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.1 GO:0045430 chalcone isomerase activity(GO:0045430)
0.0 2.3 GO:0019901 protein kinase binding(GO:0019901)
0.0 0.4 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.1 GO:0004751 ribose-5-phosphate isomerase activity(GO:0004751)
0.0 0.1 GO:0010313 phytochrome binding(GO:0010313)
0.0 2.9 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.2 GO:0010997 anaphase-promoting complex binding(GO:0010997)
0.0 0.4 GO:0005381 iron ion transmembrane transporter activity(GO:0005381) manganese ion transmembrane transporter activity(GO:0005384) cadmium ion transmembrane transporter activity(GO:0015086)
0.0 0.2 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.1 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.0 0.5 GO:0016843 amine-lyase activity(GO:0016843)
0.0 0.8 GO:0019900 kinase binding(GO:0019900)
0.0 0.4 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.3 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.4 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 1.0 GO:0043621 protein self-association(GO:0043621)
0.0 0.3 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.0 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.0 0.2 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0016274 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.0 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.0 0.0 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.7 GO:0042910 xenobiotic transporter activity(GO:0042910)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.2 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.0 0.4 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.4 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation