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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G24260
Z-value: 5.41
Transcription factors associated with AT1G24260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G24260
|
AT1G24260 | K-box region and MADS-box transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SEP3 | arTal_v1_Chr1_-_8596098_8596123 | -0.09 | 6.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 20.08 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 19.42 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 19.32 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 18.97 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 18.56 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 17.29 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 17.03 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 17.01 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 16.92 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 16.81 |
AT3G01500.3
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G24260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 6.2 | 100.0 | GO:0015976 | carbon utilization(GO:0015976) |
| 1.0 | 89.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 4.6 | 83.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 2.7 | 70.8 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
| 1.0 | 64.8 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 1.0 | 55.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 2.0 | 53.3 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
| 2.8 | 52.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 4.7 | 52.0 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 5.6 | 50.2 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 368.9 | GO:0005576 | extracellular region(GO:0005576) |
| 1.0 | 258.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.7 | 126.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.6 | 118.9 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 2.3 | 96.9 | GO:0010319 | stromule(GO:0010319) |
| 0.4 | 88.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 1.6 | 85.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 73.3 | GO:0009507 | chloroplast(GO:0009507) |
| 0.4 | 45.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 5.0 | 44.6 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 183.7 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 3.5 | 110.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 103.8 | GO:0005524 | ATP binding(GO:0005524) |
| 5.9 | 83.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 3.1 | 71.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 2.0 | 50.3 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 2.1 | 48.2 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.7 | 46.2 | GO:0043621 | protein self-association(GO:0043621) |
| 0.6 | 44.7 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.3 | 42.9 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 8.5 | 67.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 2.0 | 11.8 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 3.7 | 11.2 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 1.8 | 10.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 1.0 | 4.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.6 | 3.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 1.1 | 3.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.3 | 3.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.9 | 2.8 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.6 | 2.4 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 16.4 | 98.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 6.6 | 19.8 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 3.7 | 11.2 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 2.2 | 10.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 1.9 | 9.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 2.9 | 8.8 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.7 | 5.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 5.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 1.0 | 5.1 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 1.5 | 4.4 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |