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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G24250

Z-value: 2.18

Transcription factors associated with AT1G24250

Gene Symbol Gene ID Gene Info
AT1G24250 Paired amphipathic helix (PAH2) superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G24250arTal_v1_Chr1_-_8589546_8589546-0.291.4e-01Click!

Activity profile of AT1G24250 motif

Sorted Z-values of AT1G24250 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_18291218 10.34 AT4G39330.1
AT4G39330.2
cinnamyl alcohol dehydrogenase 9
Chr2_+_16130290 9.65 AT2G38540.1
lipid transfer protein 1
Chr1_+_10371675 9.54 AT1G29660.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_17760865 9.52 AT5G44130.1
FASCICLIN-like arabinogalactan protein 13 precursor
Chr3_-_3357754 9.25 AT3G10720.2
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_+_5681380 9.19 AT3G16670.1
Pollen Ole e 1 allergen and extensin family protein
Chr4_-_176870 8.77 AT4G00400.1
glycerol-3-phosphate acyltransferase 8
Chr3_-_16448844 8.57 AT3G44990.1
xyloglucan endo-transglycosylase-related 8
Chr2_+_8940833 8.44 AT2G20750.2
AT2G20750.1
expansin B1
Chr4_+_12660687 8.37 AT4G24510.1
HXXXD-type acyl-transferase family protein
Chr1_-_27340044 8.13 AT1G72610.1
germin-like protein 1
Chr5_-_14562863 8.07 AT5G36910.1
thionin 2.2
Chr1_+_3008910 7.95 AT1G09310.1
plant/protein (Protein of unknown function, DUF538)
Chr3_-_8589754 7.91 AT3G23810.1
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr3_-_3356811 7.87 AT3G10720.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_-_4171954 7.82 AT5G13140.1
Pollen Ole e 1 allergen and extensin family protein
Chr1_-_6999839 7.76 AT1G20190.1
expansin 11
Chr2_-_15474717 7.75 AT2G36870.2
AT2G36870.1
xyloglucan endotransglucosylase/hydrolase 32
Chr1_+_9740508 7.66 AT1G27950.1
glycosylphosphatidylinositol-anchored lipid protein transfer 1
Chr1_-_28419635 7.54 AT1G75680.1
glycosyl hydrolase 9B7
Chr1_+_907523 7.54 AT1G03630.1
AT1G03630.2
protochlorophyllide oxidoreductase C
Chr2_-_15137012 7.52 AT2G36050.1
ovate family protein 15
Chr3_-_7796310 7.51 AT3G22120.1
AT3G22120.2
cell wall-plasma membrane linker protein
Chr3_-_19139423 7.44 AT3G51600.1
lipid transfer protein 5
Chr1_+_17918207 7.39 AT1G48480.1
receptor-like kinase 1
Chr1_-_6999523 7.23 AT1G20190.2
expansin 11
Chr4_+_16022269 7.13 AT4G33220.1
AT4G33220.2
pectin methylesterase 44
Chr4_-_12768239 6.82 AT4G24770.1
31-kDa RNA binding protein
Chr3_+_17949416 6.79 AT3G48460.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_12769419 6.78 AT4G24770.2
31-kDa RNA binding protein
Chr5_-_17581275 6.71 AT5G43750.1
NAD(P)H dehydrogenase 18
Chr4_+_493546 6.66 AT4G01150.1
AT4G01150.2
CURVATURE THYLAKOID 1A-like protein
Chr1_-_6319427 6.62 AT1G18360.1
alpha/beta-Hydrolases superfamily protein
Chr4_-_18370698 6.57 AT4G39510.1
cytochrome P450, family 96, subfamily A, polypeptide 12
Chr5_+_2680401 6.53 AT5G08330.1
TCP family transcription factor
Chr3_-_15617149 6.50 AT3G43720.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_6842946 6.49 AT5G20270.1
heptahelical transmembrane protein1
Chr1_+_418726 6.47 AT1G02205.4
AT1G02205.3
AT1G02205.5
AT1G02205.1
Fatty acid hydroxylase superfamily
Chr1_+_10321011 6.45 AT1G29500.1
SAUR-like auxin-responsive protein family
Chr3_-_15617309 6.43 AT3G43720.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_19191247 6.36 AT2G46710.1
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr3_-_20903080 6.34 AT3G56370.1
Leucine-rich repeat protein kinase family protein
Chr5_+_19825078 6.33 AT5G48900.1
Pectin lyase-like superfamily protein
Chr5_-_24990331 6.31 AT5G62220.1
glycosyltransferase 18
Chr1_-_28603932 6.05 AT1G76240.1
DUF241 domain protein (DUF241)
Chr1_+_27452748 6.05 AT1G72970.1
AT1G72970.2
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr1_+_23911024 6.04 AT1G64390.1
glycosyl hydrolase 9C2
Chr5_-_26453199 5.98 AT5G66190.2
AT5G66190.1
ferredoxin-NADP[+]-oxidoreductase 1
Chr4_+_15819489 5.98 AT4G32800.1
Integrase-type DNA-binding superfamily protein
Chr5_-_671687 5.98 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr1_+_12026936 5.92 AT1G33170.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_18530834 5.90 AT5G45680.1
FK506-binding protein 13
Chr4_-_7591259 5.88 AT4G12980.1
Auxin-responsive family protein
Chr4_+_9803624 5.66 AT4G17600.1
Chlorophyll A-B binding family protein
Chr3_-_18628888 5.64 AT3G50240.3
AT3G50240.2
AT3G50240.4
AT3G50240.1
ATP binding microtubule motor family protein
Chr4_+_13177356 5.61 AT4G25960.1
P-glycoprotein 2
Chr1_-_25833966 5.60 AT1G68780.1
RNI-like superfamily protein
Chr2_-_12277417 5.57 AT2G28630.2
3-ketoacyl-CoA synthase 12
Chr4_+_16357421 5.49 AT4G34160.1
CYCLIN D3;1
Chr1_-_28581315 5.46 AT1G76160.1
SKU5 similar 5
Chr2_-_12277245 5.42 AT2G28630.1
3-ketoacyl-CoA synthase 12
Chr5_-_7419335 5.42 AT5G22390.1
FANTASTIC four-like protein (DUF3049)
Chr5_+_22530007 5.40 AT5G55620.1
hypothetical protein
Chr1_+_9259750 5.37 AT1G26770.2
expansin A10
Chr2_-_11173278 5.22 AT2G26250.1
3-ketoacyl-CoA synthase 10
Chr1_+_9259432 5.18 AT1G26770.1
expansin A10
Chr4_-_8350030 5.15 AT4G14550.4
indole-3-acetic acid inducible 14
Chr1_-_19101265 5.13 AT1G51500.1
ABC-2 type transporter family protein
Chr1_-_22317070 5.11 AT1G60590.1
Pectin lyase-like superfamily protein
Chr1_-_1307973 5.09 AT1G04680.1
Pectin lyase-like superfamily protein
Chr2_-_14125526 5.07 AT2G33330.1
plasmodesmata-located protein 3
Chr4_+_11128941 5.06 AT4G20760.2
AT4G20760.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_24033600 5.00 AT1G64670.1
AT1G64670.3
AT1G64670.2
alpha/beta-Hydrolases superfamily protein
Chr2_+_6542166 4.98 AT2G15090.1
3-ketoacyl-CoA synthase 8
Chr3_+_6105908 4.97 AT3G17840.1
receptor-like kinase 902
Chr1_+_28498821 4.95 AT1G75900.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_418416 4.95 AT1G02205.2
Fatty acid hydroxylase superfamily
Chr3_-_18559326 4.94 AT3G50060.1
myb domain protein 77
Chr4_+_14192569 4.93 AT4G28720.1
Flavin-binding monooxygenase family protein
Chr5_+_24240810 4.92 AT5G60200.1
TARGET OF MONOPTEROS 6
Chr1_-_19978048 4.85 AT1G53520.1
Chalcone-flavanone isomerase family protein
Chr1_+_26129551 4.82 AT1G69523.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_17065858 4.78 AT1G45130.2
beta-galactosidase 5
Chr3_-_10877578 4.77 AT3G28860.1
ATP binding cassette subfamily B19
Chr3_-_9255083 4.77 AT3G25500.1
formin homology 1
Chr4_-_8350263 4.76 AT4G14550.1
AT4G14550.2
AT4G14550.3
indole-3-acetic acid inducible 14
Chr3_+_2612175 4.76 AT3G08600.1
transmembrane protein, putative (DUF1191)
Chr1_+_18351324 4.71 AT1G49580.1
Calcium-dependent protein kinase (CDPK) family protein
Chr1_+_26439556 4.71 AT1G70210.1
CYCLIN D1;1
Chr1_+_568558 4.67 AT1G02650.2
AT1G02650.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_19747114 4.66 AT3G53260.1
phenylalanine ammonia-lyase 2
Chr5_-_14199431 4.64 AT5G36120.1
cofactor assembly, complex C (B6F)
Chr1_+_17065111 4.62 AT1G45130.1
beta-galactosidase 5
Chr3_+_20196329 4.60 AT3G54560.2
histone H2A 11
Chr4_-_16536224 4.58 AT4G34620.1
small subunit ribosomal protein 16
Chr1_+_1843463 4.58 AT1G06080.1
AT1G06080.2
delta 9 desaturase 1
Chr2_-_7768040 4.58 AT2G17880.1
Chaperone DnaJ-domain superfamily protein
Chr5_+_463073 4.56 AT5G02260.1
expansin A9
Chr4_+_8520819 4.56 AT4G14890.1
2Fe-2S ferredoxin-like superfamily protein
Chr2_-_9073233 4.53 AT2G21170.2
AT2G21170.1
triosephosphate isomerase
Chr3_+_20196140 4.51 AT3G54560.1
histone H2A 11
Chr2_+_7209108 4.51 AT2G16630.1
Pollen Ole e 1 allergen and extensin family protein
Chr2_-_9074470 4.47 AT2G21170.3
triosephosphate isomerase
Chr5_+_7529292 4.46 AT5G22640.3
AT5G22640.1
AT5G22640.2
MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein
Chr4_+_3356535 4.41 AT4G06534.1
transmembrane protein
Chr3_-_8290164 4.40 AT3G23230.1
Integrase-type DNA-binding superfamily protein
Chr5_-_22988092 4.37 AT5G56850.3
AT5G56850.1
AT5G56850.2
AT5G56850.4
hypothetical protein
Chr2_+_14849357 4.34 AT2G35260.1
CAAX protease self-immunity protein
Chr5_+_25328119 4.33 AT5G63140.1
purple acid phosphatase 29
Chr1_-_29643535 4.31 AT1G78850.1
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr3_+_9794862 4.30 AT3G26650.1
glyceraldehyde 3-phosphate dehydrogenase A subunit
Chr5_+_26061165 4.30 AT5G65220.1
Ribosomal L29 family protein
Chr5_+_5223934 4.25 AT5G16000.1
NSP-interacting kinase 1
Chr2_-_16573519 4.23 AT2G39730.3
rubisco activase
Chr2_-_16573692 4.23 AT2G39730.1
AT2G39730.2
rubisco activase
Chr2_-_17161293 4.16 AT2G41170.2
AT2G41170.1
AT2G41170.3
F-box family protein
Chr1_-_28961974 4.15 AT1G77090.1
thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
Chr1_-_6213591 4.15 AT1G18060.1
microbial collagenase
Chr5_+_25187221 4.12 AT5G62710.1
AT5G62710.2
Leucine-rich repeat protein kinase family protein
Chr5_+_8277700 4.12 AT5G24314.2
AT5G24314.1
plastid transcriptionally active7
Chr4_-_9305763 4.10 AT4G16515.1
AT4G16515.2
root meristem growth factor
Chr5_+_23903872 4.08 AT5G59250.1
Major facilitator superfamily protein
Chr1_+_7981722 4.07 AT1G22590.1
AGAMOUS-like 87
Chr5_-_21992812 4.05 AT5G54190.2
AT5G54190.1
protochlorophyllide oxidoreductase A
Chr1_-_17015497 4.04 AT1G45010.2
AT1G45010.3
AT1G45010.4
AT1G45010.1
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Chr3_+_22151164 4.04 AT3G59970.3
AT3G59970.2
AT3G59970.1
methylenetetrahydrofolate reductase 1
Chr1_-_3272110 4.01 AT1G10020.1
formin-like protein (DUF1005)
Chr4_+_18126057 4.00 AT4G38850.1
SAUR-like auxin-responsive protein family
Chr2_+_15765698 4.00 AT2G37585.1
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr1_-_5858446 3.98 AT1G17140.1
AT1G17140.2
interactor of constitutive active rops 1
Chr3_-_7066729 3.91 AT3G20260.1
DUF1666 family protein (DUF1666)
Chr1_-_18413016 3.87 AT1G49750.1
Leucine-rich repeat (LRR) family protein
Chr1_-_29147498 3.84 AT1G77580.1
AT1G77580.3
AT1G77580.4
AT1G77580.2
filament-like protein (DUF869)
Chr5_-_22987509 3.82 AT5G56850.6
AT5G56850.7
hypothetical protein
Chr1_+_4084162 3.82 AT1G12080.1
AT1G12080.2
Vacuolar calcium-binding protein-like protein
Chr5_-_8910063 3.81 AT5G25590.1
DNA ligase (DUF630 and DUF632)
Chr4_-_18358980 3.80 AT4G39460.2
AT4G39460.3
AT4G39460.1
S-adenosylmethionine carrier 1
Chr1_+_17766738 3.78 AT1G48100.1
Pectin lyase-like superfamily protein
Chr5_-_23830520 3.72 AT5G59020.1
hepatocyte growth factor activator, putative (DUF3527)
Chr1_-_224351 3.71 AT1G01610.1
glycerol-3-phosphate acyltransferase 4
Chr1_-_22327359 3.69 AT1G60600.2
AT1G60600.1
UbiA prenyltransferase family protein
Chr1_+_564018 3.68 AT1G02640.1
beta-xylosidase 2
Chr5_+_568425 3.62 AT5G02540.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_11555503 3.62 AT4G21750.4
AT4G21750.3
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr1_-_25738134 3.62 AT1G68560.1
alpha-xylosidase 1
Chr2_-_14810164 3.61 AT2G35130.1
AT2G35130.3
AT2G35130.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_5136874 3.59 AT1G14890.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_10674395 3.58 AT3G28460.1
AT3G28460.2
methyltransferase
Chr3_-_1858946 3.57 AT3G06140.1
RING/U-box superfamily protein
Chr4_+_11555039 3.57 AT4G21750.2
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr1_+_29871326 3.56 AT1G79420.1
C-type mannose receptor (DUF620)
Chr1_+_21502905 3.56 AT1G58070.1
WEB family protein
Chr2_-_18706266 3.55 AT2G45400.4
AT2G45400.2
AT2G45400.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_+_6032072 3.53 AT3G17640.1
Leucine-rich repeat (LRR) family protein
Chr3_-_1643174 3.53 AT3G05640.2
AT3G05640.1
AT3G05640.3
Protein phosphatase 2C family protein
Chr5_-_8175431 3.52 AT5G24150.2
AT5G24150.1
FAD/NAD(P)-binding oxidoreductase family protein
Chr5_+_26236964 3.51 AT5G65640.1
AT5G65640.2
beta HLH protein 93
Chr4_+_6869863 3.47 AT4G11290.1
Peroxidase superfamily protein
Chr4_+_11555951 3.47 AT4G21750.1
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr4_+_12366851 3.44 AT4G23740.2
Leucine-rich repeat protein kinase family protein
Chr4_-_8050157 3.43 AT4G13930.1
serine hydroxymethyltransferase 4
Chr2_+_18253610 3.39 AT2G44130.1
Galactose oxidase/kelch repeat superfamily protein
Chr5_+_17714390 3.38 AT5G44030.2
AT5G44030.1
cellulose synthase A4
Chr4_+_17150740 3.37 AT4G36250.1
aldehyde dehydrogenase 3F1
Chr4_+_12366082 3.36 AT4G23740.1
Leucine-rich repeat protein kinase family protein
Chr5_-_22080341 3.36 AT5G54380.1
protein kinase family protein
Chr5_-_22987029 3.35 AT5G56850.8
hypothetical protein
Chr3_+_18249663 3.35 AT3G49220.2
AT3G49220.3
AT3G49220.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_1455322 3.35 AT1G05065.1
CLAVATA3/ESR-RELATED 20
Chr4_-_2388105 3.33 AT4G04700.1
calcium-dependent protein kinase 27
Chr5_-_10933061 3.29 AT5G28910.2
AT5G28910.1
alpha-(1,6)-fucosyltransferase
Chr1_-_16984444 3.29 AT1G44920.1
transmembrane protein
Chr2_+_10375439 3.28 AT2G24395.1
chaperone protein dnaJ-like protein
Chr2_-_12685145 3.28 AT2G29670.2
AT2G29670.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_18457303 3.26 AT5G45530.1
transmembrane protein, putative (DUF594)
Chr4_-_15718858 3.26 AT4G32570.2
AT4G32570.1
TIFY domain protein 8
Chr5_-_22987194 3.24 AT5G56850.5
hypothetical protein
Chr1_+_17525342 3.22 AT1G47655.1
Dof-type zinc finger DNA-binding family protein
Chr4_+_7480556 3.22 AT4G12690.2
AT4G12690.1
DUF868 family protein (DUF868)
Chr5_+_15611812 3.19 AT5G39000.1
Malectin/receptor-like protein kinase family protein
Chr3_+_20028052 3.15 AT3G54090.1
fructokinase-like 1
Chr5_-_21977104 3.14 AT5G54148.1
sarcosine dehydrogenase-2C protein
Chr5_-_358962 3.12 AT5G01910.2
AT5G01910.1
myelin transcription factor
Chr5_+_2063414 3.12 AT5G06700.1
trichome birefringence-like protein (DUF828)
Chr5_+_19031301 3.07 AT5G46880.1
AT5G46880.3
homeobox-7
Chr3_-_21963180 3.05 AT3G59420.1
crinkly4
Chr1_+_2696381 3.05 AT1G08520.1
ALBINA 1
Chr1_-_22926625 3.02 AT1G62030.1
Cysteine/Histidine-rich C1 domain family protein
Chr1_+_17116044 3.01 AT1G45191.6
AT1G45191.2
AT1G45191.1
AT1G45191.5
Glycosyl hydrolase superfamily protein
Chr1_+_7233654 3.00 AT1G20816.1
outer envelope pore-like protein
Chr3_-_1153650 2.99 AT3G04340.1
FtsH extracellular protease family
Chr3_-_10674143 2.97 AT3G28460.3
methyltransferase
Chr5_+_19595536 2.97 AT5G48360.1
Actin-binding FH2 (formin homology 2) family protein
Chr5_-_6184038 2.96 AT5G18600.1
Thioredoxin superfamily protein
Chr1_-_27265806 2.95 AT1G72430.1
SAUR-like auxin-responsive protein family
Chr2_+_13518199 2.94 AT2G31790.1
UDP-Glycosyltransferase superfamily protein
Chr5_-_5741500 2.94 AT5G17420.1
Cellulose synthase family protein
Chr4_-_2482447 2.91 AT4G04890.1
protodermal factor 2
Chr1_-_4940695 2.91 AT1G14440.2
homeobox protein 31
Chr5_-_21246682 2.89 AT5G52320.2
AT5G52320.1
cytochrome P450, family 96, subfamily A, polypeptide 4

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G24250

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.5 10.4 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
2.7 8.1 GO:0042353 fucose biosynthetic process(GO:0042353)
2.6 15.7 GO:0043447 alkane biosynthetic process(GO:0043447)
2.0 8.2 GO:0033306 phytol metabolic process(GO:0033306)
2.0 7.9 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
1.7 13.6 GO:0043489 RNA stabilization(GO:0043489)
1.6 4.8 GO:0010541 acropetal auxin transport(GO:0010541)
1.6 4.7 GO:1903890 atrichoblast differentiation(GO:0010055) positive regulation of trichoblast fate specification(GO:0010063) positive regulation of cell fate specification(GO:0042660) positive regulation of plant epidermal cell differentiation(GO:1903890)
1.5 6.0 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
1.5 4.4 GO:0010057 negative regulation of cell fate specification(GO:0009996) trichoblast fate specification(GO:0010057) regulation of trichoblast fate specification(GO:0010061) negative regulation of trichoblast fate specification(GO:0010062) regulation of plant epidermal cell differentiation(GO:1903888) negative regulation of plant epidermal cell differentiation(GO:1903889)
1.3 14.3 GO:1901959 positive regulation of cutin biosynthetic process(GO:1901959)
1.2 7.2 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
1.2 5.8 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
1.1 20.5 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
1.1 1.1 GO:0046655 folic acid metabolic process(GO:0046655)
1.0 19.6 GO:0006949 syncytium formation(GO:0006949)
1.0 17.2 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
1.0 16.6 GO:0010143 cutin biosynthetic process(GO:0010143)
1.0 4.8 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.9 3.7 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.9 20.6 GO:0009913 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
0.9 3.5 GO:0080003 thalianol metabolic process(GO:0080003)
0.9 4.4 GO:0051318 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.9 2.6 GO:0051099 CENP-A containing nucleosome assembly(GO:0034080) positive regulation of binding(GO:0051099) regulation of DNA binding(GO:0051101) CENP-A containing chromatin organization(GO:0061641)
0.8 4.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.8 2.4 GO:0009915 phloem sucrose loading(GO:0009915)
0.8 8.1 GO:0009405 pathogenesis(GO:0009405)
0.8 2.4 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.8 3.1 GO:0099636 cytoplasmic streaming(GO:0099636)
0.8 2.3 GO:0046102 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.8 20.5 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.8 7.6 GO:0030497 fatty acid elongation(GO:0030497)
0.8 5.3 GO:0072337 modified amino acid transport(GO:0072337)
0.7 10.3 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.7 7.3 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.7 2.2 GO:0042817 pyridoxal metabolic process(GO:0042817)
0.7 2.1 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.7 4.9 GO:0090057 root radial pattern formation(GO:0090057)
0.7 8.9 GO:0042793 transcription from plastid promoter(GO:0042793)
0.7 9.1 GO:0044030 regulation of DNA methylation(GO:0044030)
0.6 2.6 GO:0009305 protein biotinylation(GO:0009305)
0.6 17.3 GO:0042335 cuticle development(GO:0042335)
0.6 3.1 GO:1903792 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.6 4.4 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.6 1.8 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.6 2.3 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.6 4.6 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.6 2.8 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.5 3.7 GO:0010236 photosynthetic electron transport in photosystem II(GO:0009772) plastoquinone biosynthetic process(GO:0010236)
0.5 9.2 GO:0010166 wax biosynthetic process(GO:0010025) wax metabolic process(GO:0010166)
0.5 2.6 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.5 1.4 GO:0071266 L-methionine biosynthetic process from L-homoserine via cystathionine(GO:0019279) 'de novo' L-methionine biosynthetic process(GO:0071266)
0.5 3.7 GO:0031222 arabinan catabolic process(GO:0031222)
0.5 5.0 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.4 1.3 GO:0007000 nucleolus organization(GO:0007000)
0.4 2.7 GO:0080120 CAAX-box protein processing(GO:0071586) CAAX-box protein maturation(GO:0080120)
0.4 0.4 GO:0046500 S-adenosylmethionine metabolic process(GO:0046500)
0.4 5.6 GO:0019685 photosynthesis, dark reaction(GO:0019685)
0.4 5.1 GO:0051814 movement in host(GO:0044000) transport of virus in multicellular host(GO:0046739) movement in other organism involved in symbiotic interaction(GO:0051814) movement in host environment(GO:0052126) movement in environment of other organism involved in symbiotic interaction(GO:0052192)
0.4 4.2 GO:0080110 sporopollenin biosynthetic process(GO:0080110)
0.4 4.6 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.4 4.9 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.4 2.3 GO:0006013 mannose metabolic process(GO:0006013)
0.4 34.0 GO:0045490 pectin catabolic process(GO:0045490)
0.4 3.1 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.4 2.7 GO:1902969 mitotic DNA replication(GO:1902969)
0.4 2.6 GO:0009099 valine biosynthetic process(GO:0009099)
0.4 1.5 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.4 1.5 GO:0010500 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.4 1.1 GO:0015904 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.4 1.4 GO:0033239 negative regulation of ethylene biosynthetic process(GO:0010366) negative regulation of sulfur amino acid metabolic process(GO:0031336) negative regulation of cellular amine metabolic process(GO:0033239) negative regulation of cellular amino acid metabolic process(GO:0045763) negative regulation of sulfur metabolic process(GO:0051175) negative regulation of olefin metabolic process(GO:1900909) negative regulation of olefin biosynthetic process(GO:1900912)
0.3 2.8 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.3 6.1 GO:0007052 mitotic spindle organization(GO:0007052)
0.3 2.0 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.3 8.6 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.3 3.3 GO:0036065 fucosylation(GO:0036065)
0.3 2.3 GO:0006552 leucine catabolic process(GO:0006552)
0.3 1.3 GO:0009270 response to humidity(GO:0009270)
0.3 1.2 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.3 7.9 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.3 1.2 GO:0045597 positive regulation of cell differentiation(GO:0045597)
0.3 1.5 GO:0030322 stabilization of membrane potential(GO:0030322)
0.3 7.2 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.3 4.5 GO:0045839 negative regulation of mitotic nuclear division(GO:0045839)
0.3 3.9 GO:0015693 magnesium ion transport(GO:0015693)
0.3 1.5 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.3 1.7 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.3 1.4 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.3 1.1 GO:0010677 negative regulation of cellular carbohydrate metabolic process(GO:0010677)
0.3 2.8 GO:0080086 stamen filament development(GO:0080086)
0.3 1.4 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.3 2.2 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.3 1.1 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.3 1.1 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.3 2.1 GO:0080165 callose deposition in phloem sieve plate(GO:0080165)
0.3 2.1 GO:0010439 regulation of glucosinolate biosynthetic process(GO:0010439)
0.3 3.2 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.3 1.8 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.3 15.5 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.3 3.6 GO:0045493 xylan catabolic process(GO:0045493)
0.3 1.5 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.2 0.7 GO:0043132 NAD transport(GO:0043132)
0.2 2.4 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.2 0.9 GO:0035865 cellular response to potassium ion(GO:0035865)
0.2 2.3 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.2 0.7 GO:0034058 endosomal vesicle fusion(GO:0034058)
0.2 0.9 GO:0048205 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.2 2.0 GO:0006308 DNA catabolic process(GO:0006308)
0.2 17.2 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.2 0.8 GO:0048480 style development(GO:0048479) stigma development(GO:0048480)
0.2 1.9 GO:0051782 negative regulation of cell division(GO:0051782)
0.2 1.9 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.2 2.1 GO:0000966 RNA 5'-end processing(GO:0000966)
0.2 2.6 GO:2000762 regulation of phenylpropanoid metabolic process(GO:2000762)
0.2 1.4 GO:0015689 molybdate ion transport(GO:0015689)
0.2 3.3 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.2 12.6 GO:0007267 cell-cell signaling(GO:0007267)
0.2 2.1 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.2 0.9 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.2 3.3 GO:1900865 chloroplast RNA modification(GO:1900865)
0.2 0.7 GO:0006768 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.2 0.7 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.2 0.9 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.2 1.9 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.2 4.5 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.2 14.3 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.2 0.3 GO:0080051 cutin transport(GO:0080051)
0.2 6.8 GO:0009809 lignin biosynthetic process(GO:0009809)
0.2 1.6 GO:0007020 microtubule nucleation(GO:0007020)
0.1 6.0 GO:0009767 photosynthetic electron transport chain(GO:0009767)
0.1 2.1 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.1 1.0 GO:0006021 inositol biosynthetic process(GO:0006021)
0.1 4.9 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 0.8 GO:0072344 rescue of stalled ribosome(GO:0072344)
0.1 2.8 GO:0042593 glucose homeostasis(GO:0042593)
0.1 0.7 GO:0050665 hydrogen peroxide biosynthetic process(GO:0050665)
0.1 3.2 GO:0009686 gibberellin biosynthetic process(GO:0009686)
0.1 2.2 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.1 1.8 GO:0010215 cellulose microfibril organization(GO:0010215)
0.1 1.6 GO:0010052 guard cell differentiation(GO:0010052)
0.1 0.4 GO:0033259 plastid DNA metabolic process(GO:0033258) plastid DNA replication(GO:0033259)
0.1 0.4 GO:0070150 mitochondrial glycyl-tRNA aminoacylation(GO:0070150)
0.1 4.5 GO:0045165 cell fate commitment(GO:0045165)
0.1 3.4 GO:0050918 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.1 6.2 GO:0010102 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.1 0.7 GO:0097502 mannosylation(GO:0097502)
0.1 2.5 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 1.1 GO:0080036 regulation of cytokinin-activated signaling pathway(GO:0080036)
0.1 3.7 GO:0009958 positive gravitropism(GO:0009958)
0.1 3.5 GO:0006284 base-excision repair(GO:0006284)
0.1 2.0 GO:0042726 flavin-containing compound metabolic process(GO:0042726)
0.1 1.5 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.1 2.4 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 1.4 GO:0006265 DNA topological change(GO:0006265)
0.1 9.2 GO:0006869 lipid transport(GO:0006869)
0.1 0.6 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.1 1.4 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.1 0.5 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.1 1.1 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.1 0.5 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 1.9 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.1 0.5 GO:0006273 lagging strand elongation(GO:0006273)
0.1 0.8 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.7 GO:0071423 malate transmembrane transport(GO:0071423)
0.1 2.1 GO:0051510 regulation of unidimensional cell growth(GO:0051510)
0.1 4.3 GO:0005985 sucrose metabolic process(GO:0005985)
0.1 0.2 GO:0034394 protein localization to cell surface(GO:0034394)
0.1 0.4 GO:0009866 induced systemic resistance, ethylene mediated signaling pathway(GO:0009866)
0.1 0.4 GO:0048655 anther morphogenesis(GO:0048654) anther wall tapetum morphogenesis(GO:0048655)
0.1 1.0 GO:0036297 interstrand cross-link repair(GO:0036297)
0.1 1.1 GO:0006085 acetyl-CoA biosynthetic process(GO:0006085)
0.1 1.9 GO:0006094 gluconeogenesis(GO:0006094)
0.1 7.7 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.1 0.7 GO:0032886 regulation of microtubule-based process(GO:0032886)
0.1 0.4 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 0.5 GO:0031333 negative regulation of protein complex assembly(GO:0031333)
0.1 4.0 GO:0009664 plant-type cell wall organization(GO:0009664)
0.1 1.0 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.1 4.1 GO:0007018 microtubule-based movement(GO:0007018)
0.1 3.5 GO:0048767 root hair elongation(GO:0048767)
0.1 1.3 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.1 2.0 GO:0045595 regulation of cell differentiation(GO:0045595)
0.1 0.6 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.1 2.9 GO:0009644 response to high light intensity(GO:0009644)
0.1 0.8 GO:0072595 maintenance of protein localization in organelle(GO:0072595)
0.1 2.6 GO:0010090 trichome morphogenesis(GO:0010090)
0.1 2.3 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 1.6 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.1 1.0 GO:0035265 organ growth(GO:0035265)
0.0 0.6 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.0 0.4 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.0 0.8 GO:0051123 RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.0 1.2 GO:0010089 xylem development(GO:0010089)
0.0 0.9 GO:0051225 spindle assembly(GO:0051225)
0.0 0.5 GO:0000919 cell plate assembly(GO:0000919)
0.0 0.9 GO:0000373 Group II intron splicing(GO:0000373)
0.0 1.6 GO:0010197 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.4 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 4.9 GO:0015979 photosynthesis(GO:0015979)
0.0 0.8 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.0 1.4 GO:0016125 sterol metabolic process(GO:0016125)
0.0 0.9 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.4 GO:0045039 inner mitochondrial membrane organization(GO:0007007) protein import into mitochondrial inner membrane(GO:0045039)
0.0 3.3 GO:0007017 microtubule-based process(GO:0007017)
0.0 0.8 GO:0006378 mRNA polyadenylation(GO:0006378)
0.0 0.5 GO:0046379 UDP-L-arabinose biosynthetic process(GO:0033358) extracellular polysaccharide biosynthetic process(GO:0045226) capsule polysaccharide biosynthetic process(GO:0045227) capsule organization(GO:0045230) extracellular polysaccharide metabolic process(GO:0046379)
0.0 1.1 GO:0006739 NADP metabolic process(GO:0006739)
0.0 1.7 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 2.9 GO:0048509 regulation of meristem development(GO:0048509)
0.0 1.8 GO:0009734 auxin-activated signaling pathway(GO:0009734)
0.0 0.7 GO:0009082 branched-chain amino acid biosynthetic process(GO:0009082)
0.0 1.2 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.0 0.5 GO:0080027 response to herbivore(GO:0080027)
0.0 0.3 GO:0045116 protein neddylation(GO:0045116)
0.0 1.5 GO:0009631 cold acclimation(GO:0009631)
0.0 0.5 GO:0044070 regulation of anion transport(GO:0044070)
0.0 0.7 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.1 GO:1901879 regulation of actin filament depolymerization(GO:0030834) regulation of protein depolymerization(GO:1901879)
0.0 1.2 GO:0090487 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 0.9 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.0 0.5 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.8 GO:0043254 regulation of protein complex assembly(GO:0043254)
0.0 0.5 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 1.7 GO:0016579 protein deubiquitination(GO:0016579)
0.0 1.7 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.0 0.4 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.3 GO:0000387 spliceosomal snRNP assembly(GO:0000387)
0.0 0.4 GO:0019915 lipid storage(GO:0019915)
0.0 1.2 GO:0006261 DNA-dependent DNA replication(GO:0006261)
0.0 0.1 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.0 0.2 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.3 GO:0009682 induced systemic resistance(GO:0009682)
0.0 0.2 GO:0009299 mRNA transcription(GO:0009299)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.6 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.8 4.2 GO:0033597 mitotic checkpoint complex(GO:0033597)
0.7 2.9 GO:0010330 cellulose synthase complex(GO:0010330)
0.7 2.1 GO:0031897 Tic complex(GO:0031897)
0.7 4.2 GO:0009346 citrate lyase complex(GO:0009346)
0.7 4.0 GO:0009360 DNA polymerase III complex(GO:0009360)
0.6 3.1 GO:0010007 magnesium chelatase complex(GO:0010007)
0.6 3.0 GO:0034425 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.6 5.7 GO:0016272 prefoldin complex(GO:0016272)
0.4 7.6 GO:0009531 secondary cell wall(GO:0009531)
0.4 4.1 GO:0000427 plastid-encoded plastid RNA polymerase complex(GO:0000427)
0.3 12.8 GO:0010319 stromule(GO:0010319)
0.3 7.1 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.3 6.2 GO:0009986 cell surface(GO:0009986)
0.3 49.7 GO:0009505 plant-type cell wall(GO:0009505)
0.3 2.7 GO:0042555 MCM complex(GO:0042555)
0.2 1.5 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.2 10.1 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.2 2.1 GO:0000922 spindle pole(GO:0000922)
0.2 10.9 GO:0009706 chloroplast inner membrane(GO:0009706)
0.2 4.0 GO:0090404 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.2 0.7 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.2 4.1 GO:0005871 kinesin complex(GO:0005871)
0.2 40.8 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.2 3.9 GO:0055028 cortical microtubule(GO:0055028)
0.2 3.5 GO:0042644 chloroplast nucleoid(GO:0042644)
0.2 2.1 GO:0072686 mitotic spindle(GO:0072686)
0.1 19.0 GO:0009579 thylakoid(GO:0009579)
0.1 1.4 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.1 37.9 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.1 6.5 GO:0005811 lipid particle(GO:0005811)
0.1 2.2 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.1 15.8 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 2.4 GO:0031307 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.1 3.6 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.1 1.8 GO:0031965 nuclear membrane(GO:0031965)
0.1 8.0 GO:0005615 extracellular space(GO:0005615)
0.1 0.6 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)
0.1 0.7 GO:0030897 HOPS complex(GO:0030897)
0.1 1.3 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.1 0.8 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.1 16.3 GO:0048046 apoplast(GO:0048046)
0.1 179.6 GO:0005576 extracellular region(GO:0005576)
0.1 0.4 GO:0042721 mitochondrial inner membrane protein insertion complex(GO:0042721)
0.1 0.9 GO:0005880 nuclear microtubule(GO:0005880)
0.1 0.8 GO:0005801 cis-Golgi network(GO:0005801)
0.1 15.2 GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network(GO:0042175)
0.1 5.3 GO:0015935 small ribosomal subunit(GO:0015935)
0.1 0.4 GO:0017119 Golgi transport complex(GO:0017119)
0.1 6.8 GO:0000790 nuclear chromatin(GO:0000790)
0.0 9.9 GO:0016021 integral component of membrane(GO:0016021)
0.0 0.9 GO:0005686 U2 snRNP(GO:0005686)
0.0 1.4 GO:0090406 pollen tube(GO:0090406)
0.0 5.9 GO:0005802 trans-Golgi network(GO:0005802)
0.0 14.4 GO:0005783 endoplasmic reticulum(GO:0005783)
0.0 10.4 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.3 GO:0005732 small nucleolar ribonucleoprotein complex(GO:0005732)
0.0 1.6 GO:0005743 mitochondrial inner membrane(GO:0005743)
0.0 5.4 GO:0005911 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
4.5 13.6 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
3.9 11.6 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
3.5 10.4 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
2.7 8.1 GO:0050577 GDP-L-fucose synthase activity(GO:0050577)
2.6 7.9 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
1.8 7.2 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
1.5 12.3 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
1.5 6.0 GO:0046593 mandelonitrile lyase activity(GO:0046593)
1.5 6.0 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
1.4 4.3 GO:0047100 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity(GO:0047100)
1.3 5.3 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
1.1 5.6 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
1.1 24.9 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
1.1 8.6 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
1.1 9.6 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.9 8.2 GO:0043495 protein anchor(GO:0043495)
0.9 2.7 GO:1990518 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.9 4.3 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.8 10.3 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.8 2.4 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.8 6.9 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.7 2.1 GO:0004359 glutaminase activity(GO:0004359)
0.7 4.2 GO:0003878 ATP citrate synthase activity(GO:0003878)
0.7 3.4 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.7 2.0 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.6 2.6 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.6 2.6 GO:0004075 biotin carboxylase activity(GO:0004075)
0.6 2.6 GO:0018271 biotin-[acetyl-CoA-carboxylase] ligase activity(GO:0004077) biotin-protein ligase activity(GO:0018271)
0.6 1.9 GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity(GO:0008534)
0.6 1.9 GO:0004347 glucose-6-phosphate isomerase activity(GO:0004347)
0.6 15.5 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.6 15.4 GO:0004565 beta-galactosidase activity(GO:0004565)
0.6 2.4 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.6 1.8 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.6 6.9 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.6 2.3 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.6 2.8 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.6 7.3 GO:0046556 alpha-L-arabinofuranosidase activity(GO:0046556)
0.5 10.5 GO:0005199 structural constituent of cell wall(GO:0005199)
0.5 1.6 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.5 2.1 GO:0009922 fatty acid elongase activity(GO:0009922)
0.5 4.1 GO:0008083 growth factor activity(GO:0008083)
0.5 3.1 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.5 4.6 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.5 1.5 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.5 13.6 GO:0008810 cellulase activity(GO:0008810)
0.5 3.0 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.5 2.5 GO:0017116 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.5 1.5 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.5 3.4 GO:0004372 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.5 1.9 GO:0019534 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.5 13.8 GO:0008266 poly(U) RNA binding(GO:0008266)
0.5 1.4 GO:0047804 cysteine-S-conjugate beta-lyase activity(GO:0047804)
0.4 3.5 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.4 1.3 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.4 5.8 GO:0016872 intramolecular lyase activity(GO:0016872)
0.4 7.4 GO:0016844 strictosidine synthase activity(GO:0016844)
0.4 2.3 GO:0052655 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.4 9.3 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.4 3.7 GO:0002094 polyprenyltransferase activity(GO:0002094)
0.4 1.8 GO:0016731 oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor(GO:0016731)
0.3 3.1 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.3 22.6 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.3 3.3 GO:0009378 four-way junction helicase activity(GO:0009378)
0.3 2.2 GO:0052852 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.3 1.5 GO:0022840 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.3 4.0 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.3 4.2 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.3 2.4 GO:0010011 auxin binding(GO:0010011)
0.3 16.0 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.3 2.4 GO:0019158 glucokinase activity(GO:0004340) glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.3 1.5 GO:0010334 sesquiterpene synthase activity(GO:0010334)
0.3 2.3 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.3 6.1 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.3 4.9 GO:0016157 sucrose synthase activity(GO:0016157)
0.3 8.3 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.3 1.4 GO:0010179 IAA-Ala conjugate hydrolase activity(GO:0010179)
0.3 2.2 GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.3 3.9 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.3 1.1 GO:0045181 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.3 3.0 GO:0016161 beta-amylase activity(GO:0016161)
0.3 0.8 GO:0005078 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.2 2.4 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.2 2.1 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.2 2.4 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.2 0.7 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.2 1.9 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.2 2.1 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.2 1.6 GO:0043015 gamma-tubulin binding(GO:0043015)
0.2 1.1 GO:0043765 T/G mismatch-specific endonuclease activity(GO:0043765)
0.2 1.5 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.2 2.3 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.2 1.8 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.2 1.4 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.2 1.4 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.2 1.4 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.2 2.2 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.2 0.6 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.2 3.9 GO:0010333 terpene synthase activity(GO:0010333)
0.2 1.3 GO:0048487 beta-tubulin binding(GO:0048487)
0.2 2.7 GO:0030674 protein binding, bridging(GO:0030674)
0.2 10.4 GO:0005319 lipid transporter activity(GO:0005319)
0.2 0.7 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.2 1.1 GO:0046625 sphingolipid binding(GO:0046625) ceramide binding(GO:0097001)
0.2 0.7 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.2 0.7 GO:0016882 cyclo-ligase activity(GO:0016882)
0.2 1.4 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.2 1.4 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.2 37.3 GO:0008289 lipid binding(GO:0008289)
0.2 2.5 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.2 1.3 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.2 1.8 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.2 1.1 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.2 0.8 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.2 2.7 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 3.6 GO:0008378 galactosyltransferase activity(GO:0008378)
0.1 1.6 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.6 GO:0000213 tRNA-intron endonuclease activity(GO:0000213)
0.1 0.9 GO:0016838 carbon-oxygen lyase activity, acting on phosphates(GO:0016838)
0.1 8.2 GO:0010857 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.1 8.0 GO:0043621 protein self-association(GO:0043621)
0.1 0.7 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.1 8.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 8.3 GO:0003777 microtubule motor activity(GO:0003777)
0.1 2.6 GO:0080032 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.1 1.4 GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water(GO:0016717)
0.1 1.0 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.1 7.1 GO:0070008 serine-type exopeptidase activity(GO:0070008)
0.1 2.7 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 0.7 GO:0051184 cofactor transporter activity(GO:0051184)
0.1 4.1 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.1 2.2 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.1 1.2 GO:0008327 methyl-CpG binding(GO:0008327)
0.1 0.6 GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.1 4.0 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.1 0.8 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 1.5 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.1 8.0 GO:0004857 enzyme inhibitor activity(GO:0004857)
0.1 3.3 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.1 1.1 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.1 1.2 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.1 0.4 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.1 0.5 GO:0003909 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.1 0.8 GO:0046923 ER retention sequence binding(GO:0046923)
0.1 3.3 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 0.9 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.6 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.1 4.1 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.1 4.1 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.1 4.5 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.1 22.2 GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen(GO:0016705)
0.1 0.4 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.7 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.1 1.2 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 8.6 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 0.5 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.6 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.7 GO:0051753 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.0 2.3 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.1 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.0 1.2 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 3.2 GO:0101005 ubiquitinyl hydrolase activity(GO:0101005)
0.0 10.6 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 5.3 GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616)
0.0 3.5 GO:0016298 lipase activity(GO:0016298)
0.0 0.5 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.0 0.9 GO:0004568 chitinase activity(GO:0004568)
0.0 0.2 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.0 6.3 GO:0043531 ADP binding(GO:0043531)
0.0 0.4 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.4 GO:0008139 nuclear localization sequence binding(GO:0008139) nuclear import signal receptor activity(GO:0061608)
0.0 1.4 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 7.1 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.4 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.0 0.4 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 2.8 GO:0003779 actin binding(GO:0003779)
0.0 3.8 GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492)
0.0 0.4 GO:0010181 FMN binding(GO:0010181)
0.0 0.9 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 3.1 GO:0046983 protein dimerization activity(GO:0046983)
0.0 1.9 GO:0008168 methyltransferase activity(GO:0008168)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.9 11.4 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.5 1.4 PID IL8 CXCR1 PATHWAY IL8- and CXCR1-mediated signaling events
0.4 1.4 PID P53 REGULATION PATHWAY p53 pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 3.5 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.5 10.0 REACTOME DEVELOPMENTAL BIOLOGY Genes involved in Developmental Biology
0.5 1.4 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.5 1.4 REACTOME SIGNALING BY CONSTITUTIVELY ACTIVE EGFR Genes involved in Signaling by constitutively active EGFR
0.4 2.7 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.9 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis