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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G24250
Z-value: 2.18
Transcription factors associated with AT1G24250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G24250
|
AT1G24250 | Paired amphipathic helix (PAH2) superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G24250 | arTal_v1_Chr1_-_8589546_8589546 | -0.29 | 1.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 10.34 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr2_+_16130290_16130290 Show fit | 9.65 |
AT2G38540.1
|
lipid transfer protein 1 |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 9.54 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_17760865_17760865 Show fit | 9.52 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 9.25 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr3_+_5681380_5681380 Show fit | 9.19 |
AT3G16670.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr4_-_176870_176870 Show fit | 8.77 |
AT4G00400.1
|
glycerol-3-phosphate acyltransferase 8 |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 8.57 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 8.44 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr4_+_12660687_12660687 Show fit | 8.37 |
AT4G24510.1
|
HXXXD-type acyl-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G24250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 34.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.9 | 20.6 | GO:0009913 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
| 1.1 | 20.5 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.8 | 20.5 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.0 | 19.6 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.6 | 17.3 | GO:0042335 | cuticle development(GO:0042335) |
| 1.0 | 17.2 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.2 | 17.2 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 1.0 | 16.6 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 2.6 | 15.7 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 179.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 49.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 40.8 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 37.9 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 19.0 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 16.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 15.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 15.2 | GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network(GO:0042175) |
| 0.0 | 14.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.3 | 12.8 | GO:0010319 | stromule(GO:0010319) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 37.3 | GO:0008289 | lipid binding(GO:0008289) |
| 1.1 | 24.9 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 22.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 22.2 | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen(GO:0016705) |
| 0.3 | 16.0 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.6 | 15.5 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.6 | 15.4 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.5 | 13.8 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 4.5 | 13.6 | GO:0009924 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 0.5 | 13.6 | GO:0008810 | cellulase activity(GO:0008810) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.9 | 11.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.5 | 1.4 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.4 | 1.4 | PID P53 REGULATION PATHWAY | p53 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 10.0 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.7 | 3.5 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.4 | 2.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.5 | 1.4 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.5 | 1.4 | REACTOME SIGNALING BY CONSTITUTIVELY ACTIVE EGFR | Genes involved in Signaling by constitutively active EGFR |
| 0.1 | 0.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |