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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G20980
Z-value: 0.44
Transcription factors associated with AT1G20980
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G20980
|
AT1G20980 | squamosa promoter binding protein-like 14 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL14 | arTal_v1_Chr1_+_7324471_7324471 | 0.52 | 4.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 1.31 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 1.28 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 1.25 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 1.20 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 1.15 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 1.11 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 1.10 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr5_-_21265460_21265460 Show fit | 1.09 |
AT5G52390.1
|
PAR1 protein |
|
| arTal_v1_Chr3_+_4374214_4374214 Show fit | 1.09 |
AT3G13433.1
|
transmembrane protein |
|
| arTal_v1_Chr1_-_28920976_28920976 Show fit | 1.06 |
AT1G76960.1
|
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G20980
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.0 | 3.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 2.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 1.8 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.1 | 1.8 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.0 | 1.5 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.3 | 1.4 | GO:0048838 | release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438) |
| 0.3 | 1.4 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 1.3 | GO:0031540 | regulation of anthocyanin biosynthetic process(GO:0031540) |
| 0.0 | 1.3 | GO:0006090 | pyruvate metabolic process(GO:0006090) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 0.8 | GO:0005744 | mitochondrial inner membrane presequence translocase complex(GO:0005744) |
| 0.0 | 0.8 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 0.6 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 0.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 0.5 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.0 | 0.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.3 | GO:0038201 | TORC1 complex(GO:0031931) TOR complex(GO:0038201) |
| 0.0 | 0.3 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
| 0.0 | 0.3 | GO:0071011 | precatalytic spliceosome(GO:0071011) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.4 | 1.8 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.1 | 1.7 | GO:0004564 | beta-fructofuranosidase activity(GO:0004564) |
| 0.0 | 1.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 1.3 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
| 0.1 | 1.3 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.0 | 1.3 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.2 | 1.2 | GO:0015369 | calcium:proton antiporter activity(GO:0015369) |
| 0.2 | 1.2 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.0 | 1.2 | GO:0003713 | transcription coactivator activity(GO:0003713) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.2 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.1 | REACTOME G ALPHA1213 SIGNALLING EVENTS | Genes involved in G alpha (12/13) signalling events |