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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G20910
Z-value: 1.12
Transcription factors associated with AT1G20910
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G20910
|
AT1G20910 | ARID/BRIGHT DNA-binding domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G20910 | arTal_v1_Chr1_-_7281236_7281236 | 0.69 | 5.2e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 7.24 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 6.10 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 5.93 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 5.74 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 5.51 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 5.04 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 4.35 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr3_-_2849686_2849686 Show fit | 4.23 |
AT3G09270.1
|
glutathione S-transferase TAU 8 |
|
| arTal_v1_Chr4_+_7156150_7156150 Show fit | 4.23 |
AT4G11910.1
|
STAY-GREEN-like protein |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 4.07 |
AT2G47190.1
|
myb domain protein 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G20910
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 31.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 15.6 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.1 | 14.8 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.0 | 14.0 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 10.3 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.1 | 8.4 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 1.2 | 8.3 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.7 | 7.9 | GO:0010120 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
| 0.1 | 7.6 | GO:0007568 | aging(GO:0007568) |
| 1.0 | 7.3 | GO:0043090 | amino acid import(GO:0043090) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 90.5 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 12.8 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.2 | 9.4 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 8.9 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 8.0 | GO:0090406 | pollen tube(GO:0090406) |
| 0.3 | 7.4 | GO:0005771 | multivesicular body(GO:0005771) |
| 0.1 | 7.0 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 6.7 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.1 | 6.5 | GO:0005615 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.1 | 6.1 | GO:0000139 | Golgi membrane(GO:0000139) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 36.6 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.2 | 24.8 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.2 | 21.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 14.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 13.7 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
| 0.2 | 10.6 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 9.6 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 1.1 | 7.5 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.4 | 7.5 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 7.5 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 1.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.2 | 1.0 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 0.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 0.7 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.2 | 0.6 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.4 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.4 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.2 | PID INSULIN PATHWAY | Insulin Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 2.9 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.5 | 2.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.5 | 2.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 1.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 1.6 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.3 | 1.0 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.2 | 0.9 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 0.9 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.1 | 0.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |