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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G19210
Z-value: 1.59
Transcription factors associated with AT1G19210
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G19210
|
AT1G19210 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G19210 | arTal_v1_Chr1_-_6627688_6627688 | -0.48 | 9.0e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 5.42 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 4.37 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 4.36 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 4.35 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 4.18 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_+_3008910_3008910 Show fit | 4.16 |
AT1G09310.1
|
plant/protein (Protein of unknown function, DUF538) |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 3.98 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 3.97 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr1_-_7531108_7531108 Show fit | 3.96 |
AT1G21500.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_27338034_27338062 Show fit | 3.91 |
AT1G72600.2
AT1G72600.1 |
hydroxyproline-rich glycoprotein family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G19210
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 27.0 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 25.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 17.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 11.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.6 | 11.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.7 | 10.6 | GO:0010315 | auxin efflux(GO:0010315) |
| 0.6 | 10.1 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 1.6 | 9.6 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.9 | 9.6 | GO:1990066 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.5 | 8.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 57.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 50.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 48.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 42.0 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.2 | 32.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.6 | 27.3 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.5 | 19.9 | GO:0010319 | stromule(GO:0010319) |
| 1.7 | 15.1 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.3 | 14.7 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 13.1 | GO:0005802 | trans-Golgi network(GO:0005802) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 17.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 16.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.7 | 15.7 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.5 | 12.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.4 | 12.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 9.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 9.6 | GO:0019203 | carbohydrate phosphatase activity(GO:0019203) |
| 0.0 | 8.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 2.6 | 7.8 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.2 | 7.8 | GO:0001871 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 0.6 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.1 | 0.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 4.7 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 3.0 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.4 | 2.8 | REACTOME MITOTIC G2 G2 M PHASES | Genes involved in Mitotic G2-G2/M phases |
| 0.6 | 1.9 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.4 | 1.1 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.0 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.8 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.2 | 0.6 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |