Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G19000
Z-value: 0.80
Transcription factors associated with AT1G19000
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G19000
|
AT1G19000 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G19000 | arTal_v1_Chr1_-_6562786_6562791 | 0.05 | 7.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 1.54 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 1.47 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 1.37 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 1.36 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 1.35 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 1.35 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_+_23266227_23266227 Show fit | 1.34 |
AT3G62950.1
|
Thioredoxin superfamily protein |
|
| arTal_v1_Chr1_+_6612630_6612630 Show fit | 1.33 |
AT1G19150.1
|
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 1.31 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 1.29 |
AT3G01500.4
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G19000
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 14.9 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 12.5 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.5 | 7.7 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.3 | 5.6 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.5 | 4.1 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 3.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.2 | 3.8 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.3 | 3.4 | GO:0032544 | plastid translation(GO:0032544) |
| 0.2 | 3.2 | GO:0009765 | photosynthesis, light harvesting(GO:0009765) |
| 0.2 | 2.9 | GO:0010207 | photosystem II assembly(GO:0010207) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 24.2 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.0 | 14.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 11.1 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 10.6 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 9.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 7.0 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.2 | 6.9 | GO:0009523 | photosystem II(GO:0009523) |
| 0.2 | 6.8 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 6.3 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 6.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 12.6 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 6.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.8 | 4.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.3 | 4.7 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 4.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 3.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.4 | 3.4 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.1 | 3.4 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.0 | 3.4 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 2.9 | GO:0030246 | carbohydrate binding(GO:0030246) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.2 | 0.7 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 0.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.1 | 0.3 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.1 | 0.3 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.2 | PID INSULIN PATHWAY | Insulin Pathway |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 7.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 2.1 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.3 | 0.8 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.2 | 0.7 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.1 | 0.6 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
| 0.1 | 0.4 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.1 | 0.3 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.3 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 0.3 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |