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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G16490
Z-value: 1.92
Transcription factors associated with AT1G16490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G16490
|
AT1G16490 | myb domain protein 58 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB58 | arTal_v1_Chr1_-_5630476_5630476 | 0.52 | 4.9e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 13.74 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 11.77 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 11.34 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 10.93 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 9.55 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 9.47 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 9.41 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 9.37 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 9.34 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 8.58 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G16490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.6 | 46.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.4 | 24.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.9 | 23.5 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.2 | 22.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.8 | 21.2 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.7 | 20.3 | GO:0042335 | cuticle development(GO:0042335) |
| 2.5 | 15.3 | GO:1903428 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
| 0.2 | 14.6 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 1.9 | 13.1 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
| 2.0 | 12.0 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 145.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 75.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 68.4 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 1.2 | 51.7 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 48.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 41.4 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.2 | 34.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 32.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 17.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 1.8 | 16.1 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 47.8 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.6 | 37.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 23.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 1.0 | 22.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.8 | 20.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 1.4 | 17.8 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.7 | 17.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.7 | 17.3 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 16.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.6 | 14.0 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.4 | 35.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 2.9 | 11.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 2.0 | 7.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.4 | 4.0 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.8 | 3.8 | PID P73PATHWAY | p73 transcription factor network |
| 0.6 | 3.8 | PID ATM PATHWAY | ATM pathway |
| 1.6 | 3.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.4 | 1.7 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.2 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 6.3 | 37.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.5 | 9.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 1.6 | 7.9 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.2 | 4.6 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.5 | 4.0 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.4 | 2.9 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.3 | 2.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.5 | 2.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 2.2 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.3 | 2.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |