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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G14350
Z-value: 0.38
Transcription factors associated with AT1G14350
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G14350
|
AT1G14350 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FLP | arTal_v1_Chr1_+_4907887_4907917 | -0.21 | 2.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_19336072_19336135 Show fit | 0.99 |
AT1G52000.2
AT1G52000.1 |
Mannose-binding lectin superfamily protein |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 0.72 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr3_-_8229619_8229619 Show fit | 0.59 |
AT3G23120.1
|
receptor like protein 38 |
|
| arTal_v1_Chr3_+_22373013_22373013 Show fit | 0.52 |
AT3G60530.1
|
GATA transcription factor 4 |
|
| arTal_v1_Chr4_-_7992429_7992429 Show fit | 0.51 |
AT4G13770.1
|
cytochrome P450, family 83, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr4_-_7153571_7153681 Show fit | 0.51 |
AT4G11900.10
AT4G11900.8 AT4G11900.9 AT4G11900.7 AT4G11900.6 AT4G11900.3 AT4G11900.5 AT4G11900.2 AT4G11900.4 AT4G11900.1 |
S-locus lectin protein kinase family protein |
|
| arTal_v1_Chr1_-_498539_498539 Show fit | 0.46 |
AT1G02450.1
|
NIM1-interacting 1 |
|
| arTal_v1_Chr2_+_14783254_14783254 Show fit | 0.42 |
AT2G35070.1
AT2G35070.2 |
transmembrane protein |
|
| arTal_v1_Chr2_+_6947096_6947096 Show fit | 0.38 |
AT2G15960.1
|
stress-induced protein |
|
| arTal_v1_Chr3_+_9769634_9769666 Show fit | 0.35 |
AT3G26600.2
AT3G26600.1 |
armadillo repeat only 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G14350
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
| 0.0 | 0.5 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.0 | 0.5 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
| 0.0 | 0.5 | GO:0019761 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.1 | 0.3 | GO:0009093 | cysteine catabolic process(GO:0009093) |
| 0.1 | 0.3 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.0 | 0.3 | GO:0045962 | positive regulation of development, heterochronic(GO:0045962) |
| 0.1 | 0.2 | GO:0002009 | establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729) |
| 0.0 | 0.2 | GO:0010444 | G1/S transition of mitotic cell cycle(GO:0000082) guard mother cell cytokinesis(GO:0010235) guard mother cell differentiation(GO:0010444) |
| 0.0 | 0.1 | GO:0015689 | molybdate ion transport(GO:0015689) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 0.3 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 0.2 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
| 0.0 | 0.1 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
| 0.0 | 0.1 | GO:0045298 | tubulin complex(GO:0045298) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 0.5 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.0 | 0.3 | GO:0019239 | deaminase activity(GO:0019239) |
| 0.0 | 0.2 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 0.2 | GO:0030332 | cyclin binding(GO:0030332) |
| 0.0 | 0.2 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.0 | 0.2 | GO:0022839 | calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839) |
| 0.0 | 0.1 | GO:0004412 | homoserine dehydrogenase activity(GO:0004412) |
| 0.0 | 0.1 | GO:0032131 | alkylated DNA binding(GO:0032131) |
| 0.0 | 0.1 | GO:0015098 | molybdate ion transmembrane transporter activity(GO:0015098) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |