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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G13450
Z-value: 0.94
Transcription factors associated with AT1G13450
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G13450
|
AT1G13450 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GT-1 | arTal_v1_Chr1_-_4615259_4615353 | 0.13 | 5.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_26416126_26416126 Show fit | 1.92 |
AT5G66052.1
|
transmembrane protein |
|
| arTal_v1_Chr3_+_7018826_7018826 Show fit | 1.61 |
AT3G20100.1
|
cytochrome P450, family 705, subfamily A, polypeptide 19 |
|
| arTal_v1_Chr2_+_8550253_8550253 Show fit | 1.55 |
AT2G19810.1
|
CCCH-type zinc finger family protein |
|
| arTal_v1_Chr2_-_14310608_14310608 Show fit | 1.53 |
AT2G33830.2
|
Dormancy/auxin associated family protein |
|
| arTal_v1_Chr4_-_14393381_14393381 Show fit | 1.53 |
AT4G29190.1
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
|
| arTal_v1_Chr2_-_14310339_14310339 Show fit | 1.52 |
AT2G33830.1
|
Dormancy/auxin associated family protein |
|
| arTal_v1_Chr1_-_24062804_24062804 Show fit | 1.31 |
AT1G64780.1
|
ammonium transporter 1;2 |
|
| arTal_v1_Chr1_-_20172364_20172364 Show fit | 1.15 |
AT1G54040.1
|
epithiospecifier protein |
|
| arTal_v1_Chr1_-_20173933_20173949 Show fit | 1.15 |
AT1G54040.3
AT1G54040.2 |
epithiospecifier protein |
|
| arTal_v1_Chr1_+_29338530_29338530 Show fit | 1.10 |
AT1G78020.1
|
senescence-associated family protein, putative (DUF581) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G13450
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.3 | GO:0045876 | positive regulation of sister chromatid cohesion(GO:0045876) |
| 0.0 | 1.8 | GO:0090333 | regulation of stomatal closure(GO:0090333) |
| 0.0 | 1.7 | GO:0006090 | pyruvate metabolic process(GO:0006090) |
| 0.1 | 1.2 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.0 | 1.0 | GO:0009682 | induced systemic resistance(GO:0009682) |
| 0.1 | 0.9 | GO:0033683 | nucleotide-excision repair, DNA incision(GO:0033683) |
| 0.0 | 0.9 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 0.9 | GO:0010311 | lateral root formation(GO:0010311) |
| 0.1 | 0.8 | GO:0030308 | negative regulation of cell growth(GO:0030308) |
| 0.0 | 0.8 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 1.0 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 0.9 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
| 0.1 | 0.5 | GO:1990726 | Lsm1-7-Pat1 complex(GO:1990726) |
| 0.0 | 0.2 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
| 0.0 | 0.1 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 1.8 | GO:0005242 | inward rectifier potassium channel activity(GO:0005242) |
| 0.2 | 1.7 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.0 | 1.5 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 1.2 | GO:0004430 | 1-phosphatidylinositol 4-kinase activity(GO:0004430) |
| 0.3 | 0.9 | GO:0004528 | phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311) |
| 0.1 | 0.9 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.0 | 0.8 | GO:0016018 | cyclosporin A binding(GO:0016018) |
| 0.1 | 0.7 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.2 | 0.6 | GO:0010331 | gibberellin binding(GO:0010331) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.2 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |