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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G12630
Z-value: 0.78
Transcription factors associated with AT1G12630
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G12630
|
AT1G12630 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G12630 | arTal_v1_Chr1_+_4298666_4298666 | 0.11 | 5.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 4.24 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 3.91 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 3.82 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 3.78 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr2_+_10906215_10906215 Show fit | 3.76 |
AT2G25625.1
|
histone deacetylase-like protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 3.59 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 3.50 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 3.38 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 3.26 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_17076417_17076417 Show fit | 3.17 |
AT1G45145.1
|
thioredoxin H-type 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G12630
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 27.0 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
| 0.4 | 16.9 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 11.5 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 10.9 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 10.8 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.5 | 9.2 | GO:0019374 | galactolipid metabolic process(GO:0019374) |
| 0.2 | 8.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 7.4 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.6 | 7.3 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.4 | 7.0 | GO:0006826 | iron ion transport(GO:0006826) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 12.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 11.5 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 7.7 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 5.9 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.4 | 5.5 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 4.6 | GO:0005654 | nucleoplasm(GO:0005654) |
| 0.0 | 4.5 | GO:0018995 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.2 | 4.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 4.0 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 37.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 20.7 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 17.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 16.9 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 10.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 9.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 9.8 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 8.0 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.1 | 7.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 6.2 | GO:0005096 | GTPase activator activity(GO:0005096) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.5 | 1.5 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.3 | 1.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.2 | 1.4 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.5 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 0.3 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.3 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.9 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.5 | 1.8 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 1.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.0 | 1.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 1.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 1.5 | REACTOME TRANSCRIPTION | Genes involved in Transcription |
| 0.4 | 1.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.4 | 1.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 1.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |