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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G12610

Z-value: 0.74

Transcription factors associated with AT1G12610

Gene Symbol Gene ID Gene Info
AT1G12610
AT1G12610 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
DDF1arTal_v1_Chr1_-_4291017_4291017-0.471.1e-02Click!

Activity profile of AT1G12610 motif

Sorted Z-values of AT1G12610 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_13391293 4.35 AT4G26530.2
AT4G26530.1
FBA5
Aldolase superfamily protein
Chr1_-_29635931 4.25 AT1G78820.1
AT1G78820
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr3_-_197974 4.22 AT3G01500.1
CA1
carbonic anhydrase 1
Chr3_-_198160 4.16 AT3G01500.2
CA1
carbonic anhydrase 1
Chr3_-_198664 4.12 AT3G01500.3
CA1
carbonic anhydrase 1
Chr5_+_4757856 4.04 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
Chr4_+_13390754 4.03 AT4G26530.3
FBA5
Aldolase superfamily protein
Chr3_-_197564 4.01 AT3G01500.4
CA1
carbonic anhydrase 1
Chr5_+_4758921 3.46 AT5G14740.9
CA2
carbonic anhydrase 2
Chr3_+_5556710 3.45 AT3G16370.1
AT3G16370
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_19139423 3.36 AT3G51600.1
LTP5
lipid transfer protein 5
Chr2_+_2763449 3.00 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr3_-_4744263 2.99 AT3G14240.1
AT3G14240
Subtilase family protein
Chr4_-_7493080 2.87 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr1_-_4530222 2.86 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr1_+_10371675 2.84 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_2199151 2.82 AT2G05790.1
AT2G05790
O-Glycosyl hydrolases family 17 protein
Chr1_-_26711462 2.82 AT1G70830.4
AT1G70830.2
AT1G70830.1
AT1G70830.5
AT1G70830.3
MLP28
MLP-like protein 28
Chr1_+_898480 2.79 AT1G03600.1
PSB27
photosystem II family protein
Chr5_-_8916856 2.79 AT5G25610.1
RD22
BURP domain-containing protein
Chr2_+_13647699 2.73 AT2G32100.1
OFP16
ovate family protein 16
Chr2_+_15059763 2.69 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr2_-_17648945 2.66 AT2G42380.1
AT2G42380.4
AT2G42380.3
AT2G42380.2
AT2G42380.5
BZIP34
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_-_18165740 2.65 AT4G38970.2
FBA2
fructose-bisphosphate aldolase 2
Chr4_-_18166008 2.65 AT4G38970.1
FBA2
fructose-bisphosphate aldolase 2
Chr1_-_983544 2.61 AT1G03870.1
FLA9
FASCICLIN-like arabinoogalactan 9
Chr4_+_12876822 2.56 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr1_+_29575806 2.53 AT1G78630.1
emb1473
Ribosomal protein L13 family protein
Chr2_-_15474717 2.45 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr1_+_20713499 2.43 AT1G55480.1
ZKT
protein containing PDZ domain, a K-box domain, and a TPR region
Chr2_+_266559 2.42 AT2G01590.1
AT2G01590.2
CRR3
chlororespiratory reduction 3
Chr4_+_12660687 2.41 AT4G24510.1
CER2
HXXXD-type acyl-transferase family protein
Chr4_-_13398307 2.39 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr1_-_6319427 2.33 AT1G18360.1
AT1G18360
alpha/beta-Hydrolases superfamily protein
Chr5_+_16468327 2.31 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr4_-_15059846 2.31 AT4G30950.1
FAD6
fatty acid desaturase 6
Chr5_-_7419335 2.29 AT5G22390.1
AT5G22390
FANTASTIC four-like protein (DUF3049)
Chr4_-_11885533 2.27 AT4G22570.2
AT4G22570.1
APT3
adenine phosphoribosyl transferase 3
Chr1_-_26515188 2.25 AT1G70370.2
AT1G70370.1
PG2
polygalacturonase 2
Chr1_-_6487153 2.22 AT1G18810.1
AT1G18810
phytochrome kinase substrate-like protein
Chr4_-_13958107 2.20 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_6518749 2.18 AT2G15050.3
AT2G15050.1
AT2G15050.2
LTP
lipid transfer protein
Chr3_-_6855513 2.17 AT3G19720.3
AT3G19720.2
AT3G19720.1
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_2334185 2.16 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr5_-_22560461 2.15 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr4_+_9780224 2.14 AT4G17560.1
AT4G17560
Ribosomal protein L19 family protein
Chr5_-_3190321 2.09 AT5G10170.1
MIPS3
myo-inositol-1-phosphate synthase 3
Chr4_-_17355891 2.07 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr5_+_25016860 2.05 AT5G62280.1
AT5G62280
DUF1442 family protein (DUF1442)
Chr1_-_19101265 2.05 AT1G51500.1
ABCG12
ABC-2 type transporter family protein
Chr2_+_14216771 2.04 AT2G33570.1
GALS1
glycosyltransferase family protein (DUF23)
Chr3_+_11252807 2.04 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr3_+_7280792 2.02 AT3G20820.1
AT3G20820
Leucine-rich repeat (LRR) family protein
Chr4_-_16384468 2.01 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr2_-_183639 2.01 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr4_-_16806830 1.95 AT4G35320.1
AT4G35320
hypothetical protein
Chr3_-_20903080 1.94 AT3G56370.1
AT3G56370
Leucine-rich repeat protein kinase family protein
Chr5_-_24990331 1.92 AT5G62220.1
GT18
glycosyltransferase 18
Chr1_+_19879405 1.92 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr4_-_1114151 1.91 AT4G02530.1
AT4G02530.2
AT4G02530.3
AT4G02530
chloroplast thylakoid lumen protein
Chr5_-_6842946 1.91 AT5G20270.1
HHP1
heptahelical transmembrane protein1
Chr3_-_8902835 1.90 AT3G24480.1
AT3G24480
Leucine-rich repeat (LRR) family protein
Chr3_-_23417119 1.89 AT3G63410.1
APG1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_13949228 1.88 AT5G35777.1
AT5G35777

Chr2_+_12588191 1.88 AT2G29300.2
AT2G29300.1
AT2G29300
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_27778984 1.86 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr4_+_160643 1.86 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr3_-_18834834 1.86 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr5_+_23374873 1.84 AT5G57700.3
AT5G57700.2
AT5G57700.1
AT5G57700.5
AT5G57700
BNR/Asp-box repeat family protein
Chr5_+_25037191 1.83 AT5G62350.1
AT5G62350
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_4159227 1.82 AT1G12250.1
AT1G12250.3
AT1G12250.2
AT1G12250
Pentapeptide repeat-containing protein
Chr1_-_19565270 1.81 AT1G52510.2
AT1G52510.1
AT1G52510
alpha/beta-Hydrolases superfamily protein
Chr3_+_18262290 1.79 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
iqd21
IQ-domain 21
Chr1_-_15607966 1.77 AT1G41830.1
SKS6
SKU5-similar 6
Chr5_-_3728726 1.77 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
Chr1_+_23911024 1.76 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr5_+_26261136 1.75 AT5G65683.1
WAVH2
Zinc finger (C3HC4-type RING finger) family protein
Chr2_+_16011233 1.75 AT2G38230.1
PDX1.1
pyridoxine biosynthesis 1.1
Chr3_-_1832190 1.74 AT3G06070.1
AT3G06070
hypothetical protein
Chr5_+_1912013 1.74 AT5G06270.2
AT5G06270.1
AT5G06270
hypothetical protein
Chr2_+_15117015 1.73 AT2G36000.2
AT2G36000.1
EMB3114
Mitochondrial transcription termination factor family protein
Chr1_-_30113489 1.71 AT1G80050.2
APT2
adenine phosphoribosyl transferase 2
Chr5_-_740319 1.69 AT5G03140.1
AT5G03140
Concanavalin A-like lectin protein kinase family protein
Chr5_+_18528267 1.68 AT5G45670.1
AT5G45670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_21767013 1.68 AT5G53580.1
PLR1
NAD(P)-linked oxidoreductase superfamily protein
Chr5_+_24667873 1.66 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr2_+_15335284 1.66 AT2G36570.1
AT2G36570
Leucine-rich repeat protein kinase family protein
Chr1_+_3031046 1.63 AT1G09390.1
AT1G09390
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_418726 1.63 AT1G02205.4
AT1G02205.3
AT1G02205.5
AT1G02205.1
CER1
Fatty acid hydroxylase superfamily
Chr5_-_24640639 1.62 AT5G61270.3
AT5G61270.1
AT5G61270.2
PIF7
phytochrome-interacting factor7
Chr1_+_5828915 1.62 AT1G17050.1
SPS2
solanesyl diphosphate synthase 2
Chr5_+_6670275 1.61 AT5G19730.1
AT5G19730
Pectin lyase-like superfamily protein
Chr1_+_29735952 1.61 AT1G79040.1
PSBR
photosystem II subunit R
Chr1_+_116784 1.61 AT1G01300.1
AT1G01300
Eukaryotic aspartyl protease family protein
Chr2_+_14708243 1.60 AT2G34860.1
AT2G34860.2
EDA3
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Chr3_-_17658353 1.59 AT3G47860.1
CHL
chloroplastic lipocalin
Chr1_-_30114010 1.58 AT1G80050.1
APT2
adenine phosphoribosyl transferase 2
Chr2_+_18537177 1.58 AT2G44940.1
AT2G44940
Integrase-type DNA-binding superfamily protein
Chr2_-_5051613 1.57 AT2G12462.1
AT2G12462
sterile alpha motif (SAM) domain protein
Chr1_-_8935544 1.56 AT1G25440.1
BBX15
B-box type zinc finger protein with CCT domain-containing protein
Chr3_+_5314817 1.56 AT3G15680.1
AT3G15680.2
AT3G15680
Ran BP2/NZF zinc finger-like superfamily protein
Chr3_-_17138259 1.55 AT3G46550.1
SOS5
Fasciclin-like arabinogalactan family protein
Chr1_+_4735474 1.55 AT1G13820.1
AT1G13820
alpha/beta-Hydrolases superfamily protein
Chr3_-_1136397 1.55 AT3G04290.1
LTL1
Li-tolerant lipase 1
Chr5_+_26568572 1.54 AT5G66570.1
PSBO1
PS II oxygen-evolving complex 1
Chr5_+_25243405 1.54 AT5G62890.3
AT5G62890.1
AT5G62890
Xanthine/uracil permease family protein
Chr3_+_6105908 1.53 AT3G17840.1
RLK902
receptor-like kinase 902
Chr3_-_20797670 1.53 AT3G56040.1
UGP3
UDP-glucose pyrophosphorylase 3
Chr1_-_10399873 1.52 AT1G29720.1
AT1G29720
Leucine-rich repeat transmembrane protein kinase
Chr4_-_18067873 1.52 AT4G38660.2
AT4G38660
Pathogenesis-related thaumatin superfamily protein
Chr5_-_17635915 1.52 AT5G43870.1
AT5G43870.2
AT5G43870
auxin canalization protein (DUF828)
Chr1_+_21136835 1.51 AT1G56430.1
NAS4
nicotianamine synthase 4
Chr1_-_105330 1.51 AT1G01250.1
AT1G01250
Integrase-type DNA-binding superfamily protein
Chr2_+_8431363 1.51 AT2G19460.2
AT2G19460.1
AT2G19460
DUF3511 domain protein (DUF3511)
Chr2_+_18785990 1.51 AT2G45590.1
AT2G45590
Protein kinase superfamily protein
Chr4_-_18068293 1.50 AT4G38660.1
AT4G38660
Pathogenesis-related thaumatin superfamily protein
Chr2_+_8987584 1.50 AT2G20890.1
PSB29
photosystem II reaction center PSB29 protein
Chr1_-_25714807 1.50 AT1G68530.2
KCS6
3-ketoacyl-CoA synthase 6
Chr5_+_25243148 1.50 AT5G62890.2
AT5G62890.4
AT5G62890
Xanthine/uracil permease family protein
Chr1_-_25715024 1.49 AT1G68530.1
KCS6
3-ketoacyl-CoA synthase 6
Chr3_-_23260480 1.49 AT3G62910.1
APG3
Peptide chain release factor 1
Chr2_+_11388298 1.49 AT2G26730.1
AT2G26730
Leucine-rich repeat protein kinase family protein
Chr5_-_16831618 1.49 AT5G42100.1
BG_PPAP
beta-1,3-glucanase
Chr1_+_284350 1.49 AT1G01790.1
AT1G01790.2
KEA1
K+ efflux antiporter 1
Chr4_-_13496738 1.48 AT4G26830.1
AT4G26830.2
AT4G26830
O-Glycosyl hydrolases family 17 protein
Chr4_-_10278794 1.47 AT4G18670.1
AT4G18670
Leucine-rich repeat (LRR) family protein
Chr5_-_16831239 1.47 AT5G42100.2
BG_PPAP
beta-1,3-glucanase
Chr3_+_6154363 1.47 AT3G18000.1
XPL1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_419091 1.46 AT5G02120.1
OHP
one helix protein
Chr1_-_8235019 1.46 AT1G23205.1
AT1G23205
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr2_+_15106940 1.45 AT2G35960.1
NHL12
NDR1/HIN1-like 12
Chr1_-_22382422 1.45 AT1G60790.1
TBL2
trichome birefringence-like protein (DUF828)
Chr5_-_22232949 1.44 AT5G54720.1
AT5G54720
Ankyrin repeat family protein
Chr1_+_23144385 1.44 AT1G62520.1
AT1G62520
sulfated surface-like glycoprotein
Chr4_-_13752103 1.43 AT4G27520.1
ENODL2
early nodulin-like protein 2
Chr1_-_25738134 1.43 AT1G68560.1
XYL1
alpha-xylosidase 1
Chr3_-_6980523 1.42 AT3G20015.1
AT3G20015
Eukaryotic aspartyl protease family protein
Chr1_-_7040231 1.42 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr2_+_13824663 1.41 AT2G32560.1
AT2G32560.2
AT2G32560
F-box family protein
Chr3_+_20776220 1.41 AT3G55980.2
AT3G55980.1
SZF1
salt-inducible zinc finger 1
Chr5_+_7014662 1.41 AT5G20720.1
AT5G20720.4
AT5G20720.2
AT5G20720.3
CPN20
chaperonin 20
Chr2_+_15445294 1.41 AT2G36830.1
GAMMA-TIP
gamma tonoplast intrinsic protein
Chr5_-_11621298 1.40 AT5G30510.1
RPS1
ribosomal protein S1
Chr3_+_19713799 1.40 AT3G53190.1
AT3G53190
Pectin lyase-like superfamily protein
Chr5_-_23642853 1.40 AT5G58480.1
AT5G58480
O-Glycosyl hydrolases family 17 protein
Chr1_+_5602786 1.40 AT1G16390.1
OCT3
organic cation/carnitine transporter 3
Chr3_+_6744377 1.40 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr1_-_23487091 1.39 AT1G63310.1
AT1G63310
hypothetical protein
Chr1_-_25710989 1.38 AT1G68520.1
BBX14
B-box type zinc finger protein with CCT domain-containing protein
Chr4_+_15875342 1.37 AT4G32890.1
GATA9
GATA transcription factor 9
Chr4_-_17287477 1.37 AT4G36660.1
AT4G36660
polyol transporter, putative (DUF1195)
Chr5_+_15742543 1.37 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
Chr4_+_12376122 1.36 AT4G23750.1
AT4G23750.2
CRF2
cytokinin response factor 2
Chr3_-_21805335 1.36 AT3G59010.1
PME61
pectin methylesterase 61
Chr2_-_12415661 1.36 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
Chr4_+_15583332 1.35 AT4G32280.1
AT4G32280.2
AT4G32280.3
IAA29
indole-3-acetic acid inducible 29
Chr5_-_19939797 1.35 AT5G49170.1
AT5G49170
hypothetical protein
Chr1_+_418416 1.33 AT1G02205.2
CER1
Fatty acid hydroxylase superfamily
Chr1_+_195812 1.32 AT1G01540.1
AT1G01540
Protein kinase superfamily protein
Chr1_+_195645 1.32 AT1G01540.2
AT1G01540
Protein kinase superfamily protein
Chr4_-_17015099 1.31 AT4G35920.3
AT4G35920.4
AT4G35920.2
MCA1
PLAC8 family protein
Chr5_+_2063414 1.30 AT5G06700.1
AT5G06700
trichome birefringence-like protein (DUF828)
Chr5_+_23375170 1.30 AT5G57700.4
AT5G57700
BNR/Asp-box repeat family protein
Chr1_-_3518035 1.29 AT1G10640.1
AT1G10640
Pectin lyase-like superfamily protein
Chr4_-_9241384 1.29 AT4G16340.2
SPK1
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein
Chr2_-_13473556 1.28 AT2G31670.1
AT2G31670
Stress responsive alpha-beta barrel domain protein
Chr4_-_16703486 1.28 AT4G35090.3
AT4G35090.1
CAT2
catalase 2
Chr4_-_16703286 1.28 AT4G35090.2
CAT2
catalase 2
Chr1_-_1129551 1.28 AT1G04240.1
AT1G04240.2
SHY2
AUX/IAA transcriptional regulator family protein
Chr3_+_7268714 1.28 AT3G20790.1
AT3G20790
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_9241629 1.28 AT4G16340.1
SPK1
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein
Chr1_-_8082875 1.27 AT1G22850.2
AT1G22850.1
AT1G22850
SNARE associated Golgi protein family
Chr3_+_18422542 1.27 AT3G49680.1
AT3G49680.2
BCAT3
branched-chain aminotransferase 3
Chr1_+_6688463 1.27 AT1G19350.4
AT1G19350.3
AT1G19350.5
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr1_+_24554413 1.27 AT1G65960.4
GAD2
glutamate decarboxylase 2
Chr2_-_466724 1.26 AT2G01990.1
AT2G01990
XRI1-like protein
Chr5_+_72292 1.26 AT5G01190.2
AT5G01190.1
LAC10
laccase 10
Chr1_-_18378634 1.26 AT1G49650.1
AT1G49650
alpha/beta-Hydrolases superfamily protein
Chr5_+_23454592 1.26 AT5G57930.2
AT5G57930.1
APO2
APO RNA-binding protein (DUF794)
Chr2_-_466955 1.25 AT2G01990.2
AT2G01990
XRI1-like protein
Chr1_+_24551807 1.25 AT1G65960.3
AT1G65960.1
GAD2
glutamate decarboxylase 2
Chr5_-_1578690 1.23 AT5G05330.2
AT5G05330.3
AT5G05330.1
AT5G05330
HMG-box (high mobility group) DNA-binding family protein
Chr4_+_12366851 1.23 AT4G23740.2
AT4G23740
Leucine-rich repeat protein kinase family protein
Chr2_-_11459481 1.23 AT2G26870.1
NPC2
non-specific phospholipase C2
Chr1_-_9458176 1.23 AT1G27210.1
AT1G27210
ARM repeat superfamily protein
Chr1_-_10195186 1.23 AT1G29170.3
AT1G29170.1
AT1G29170.2
WAVE2
SCAR family protein
Chr2_+_9303713 1.22 AT2G21830.2
AT2G21830.1
AT2G21830
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_17465510 1.22 AT3G47400.1
AT3G47400
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_26804292 1.22 AT1G71050.1
HIPP20
Heavy metal transport/detoxification superfamily protein
Chr1_-_29647691 1.21 AT1G78860.1
AT1G78860
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr2_-_11806087 1.20 AT2G27680.1
AT2G27680
NAD(P)-linked oxidoreductase superfamily protein
Chr4_+_15024444 1.20 AT4G30860.1
SDG4
SET domain group 4
Chr1_+_24552003 1.19 AT1G65960.2
GAD2
glutamate decarboxylase 2
Chr2_+_16912805 1.19 AT2G40490.1
HEME2
Uroporphyrinogen decarboxylase
Chr3_+_3661164 1.19 AT3G11590.2
AT3G11590
golgin family A protein
Chr4_+_12366082 1.19 AT4G23740.1
AT4G23740
Leucine-rich repeat protein kinase family protein
Chr5_+_20993424 1.19 AT5G51670.1
AT5G51670.2
AT5G51670
hypothetical protein (DUF668)
Chr3_-_1153650 1.18 AT3G04340.1
emb2458
FtsH extracellular protease family
Chr4_-_2482447 1.18 AT4G04890.1
PDF2
protodermal factor 2
Chr4_+_11907355 1.18 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G12610

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 24.0 GO:0015976 carbon utilization(GO:0015976)
0.8 13.7 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.7 4.5 GO:0043447 alkane biosynthetic process(GO:0043447)
0.6 3.2 GO:0071260 cellular response to mechanical stimulus(GO:0071260)
0.6 6.4 GO:0046083 adenine metabolic process(GO:0046083) adenine biosynthetic process(GO:0046084)
0.6 1.8 GO:0090058 metaxylem development(GO:0090058)
0.6 1.7 GO:0072526 pyridoxal metabolic process(GO:0042817) pyridine-containing compound catabolic process(GO:0072526)
0.5 2.7 GO:0042549 photosystem II stabilization(GO:0042549)
0.5 1.6 GO:0046156 siroheme biosynthetic process(GO:0019354) siroheme metabolic process(GO:0046156)
0.5 1.5 GO:0046506 sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.5 1.5 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.5 3.5 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.5 1.5 GO:0019695 choline metabolic process(GO:0019695)
0.5 5.4 GO:0010206 photosystem II repair(GO:0010206)
0.5 1.4 GO:1901031 regulation of oxidoreductase activity(GO:0051341) regulation of response to reactive oxygen species(GO:1901031)
0.5 1.4 GO:0015840 urea transport(GO:0015840)
0.4 1.8 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.4 2.2 GO:0010226 response to lithium ion(GO:0010226)
0.4 2.6 GO:1904961 quiescent center organization(GO:1904961)
0.4 2.0 GO:0005980 glycogen catabolic process(GO:0005980)
0.4 1.5 GO:0051211 anisotropic cell growth(GO:0051211)
0.3 1.7 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.3 1.7 GO:1901562 response to paraquat(GO:1901562)
0.3 1.4 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.3 1.4 GO:0006023 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.3 0.9 GO:2001294 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA catabolic process(GO:2001294)
0.3 2.1 GO:0006021 inositol biosynthetic process(GO:0006021)
0.3 2.3 GO:0010205 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.3 0.8 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.3 0.8 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.3 0.8 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.3 8.6 GO:0010025 wax biosynthetic process(GO:0010025)
0.3 1.0 GO:0015959 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.2 2.2 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.2 1.2 GO:0010360 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.2 0.7 GO:0009102 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.2 0.9 GO:0099636 cytoplasmic streaming(GO:0099636)
0.2 0.6 GO:0010184 cytokinin transport(GO:0010184)
0.2 2.6 GO:0080144 amino acid homeostasis(GO:0080144)
0.2 0.6 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.2 2.5 GO:0007143 female meiotic division(GO:0007143)
0.2 2.6 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.2 3.0 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.2 1.0 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 4.3 GO:0009612 response to mechanical stimulus(GO:0009612)
0.2 0.6 GO:0001738 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.2 1.2 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.2 0.8 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.2 1.9 GO:1902025 nitrate import(GO:1902025)
0.2 4.4 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.2 1.3 GO:0009099 valine biosynthetic process(GO:0009099)
0.2 2.0 GO:0007155 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.2 1.2 GO:0051125 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.2 0.5 GO:0032978 protein insertion into membrane from inner side(GO:0032978) protein insertion into mitochondrial membrane from inner side(GO:0032979) protein insertion into mitochondrial membrane(GO:0051204)
0.2 2.2 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.2 0.8 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.2 1.1 GO:0006565 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.2 0.8 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.2 0.9 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.2 0.9 GO:0006013 mannose metabolic process(GO:0006013)
0.1 2.1 GO:0048564 photosystem I assembly(GO:0048564)
0.1 2.8 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.1 2.5 GO:0009704 de-etiolation(GO:0009704)
0.1 1.0 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.1 1.6 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.1 0.6 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.6 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.1 2.5 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 0.7 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.1 1.4 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.1 1.7 GO:0009963 positive regulation of flavonoid biosynthetic process(GO:0009963)
0.1 0.5 GO:0006409 tRNA export from nucleus(GO:0006409) tRNA transport(GO:0051031) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431)
0.1 0.9 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.1 2.4 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 0.9 GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay(GO:0043928)
0.1 1.1 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.1 0.8 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.1 0.4 GO:0031120 snRNA pseudouridine synthesis(GO:0031120)
0.1 0.7 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.1 1.5 GO:0032544 plastid translation(GO:0032544)
0.1 0.3 GO:0010028 xanthophyll cycle(GO:0010028)
0.1 0.8 GO:0080187 floral organ senescence(GO:0080187)
0.1 1.0 GO:0009799 specification of symmetry(GO:0009799)
0.1 0.8 GO:0090057 procambium histogenesis(GO:0010067) root radial pattern formation(GO:0090057)
0.1 1.4 GO:0010315 auxin efflux(GO:0010315)
0.1 0.4 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.1 0.3 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.1 1.4 GO:0010274 hydrotropism(GO:0010274)
0.1 0.7 GO:0090059 protoxylem development(GO:0090059)
0.1 0.5 GO:0006690 icosanoid metabolic process(GO:0006690) fatty acid derivative metabolic process(GO:1901568)
0.1 3.7 GO:0009958 positive gravitropism(GO:0009958)
0.1 2.4 GO:0009269 response to desiccation(GO:0009269)
0.1 1.6 GO:0010207 photosystem II assembly(GO:0010207)
0.1 0.6 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.1 1.2 GO:0009641 shade avoidance(GO:0009641)
0.1 0.5 GO:0010338 leaf formation(GO:0010338)
0.1 0.4 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.1 3.7 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 0.5 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.1 2.1 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.1 6.2 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 0.4 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.1 1.1 GO:1902183 abaxial cell fate specification(GO:0010158) regulation of shoot apical meristem development(GO:1902183)
0.1 3.2 GO:0051225 spindle assembly(GO:0051225)
0.1 7.4 GO:0045490 pectin catabolic process(GO:0045490)
0.1 1.2 GO:0046501 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.1 2.5 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.1 0.4 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 0.7 GO:0043171 peptide catabolic process(GO:0043171)
0.1 0.7 GO:0045040 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.1 1.0 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 0.6 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.1 1.1 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 0.2 GO:0015755 hexose transport(GO:0008645) fructose transport(GO:0015755)
0.1 4.3 GO:0007018 microtubule-based movement(GO:0007018)
0.1 1.5 GO:0010109 regulation of photosynthesis(GO:0010109)
0.1 1.4 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.1 0.9 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.1 6.5 GO:0006869 lipid transport(GO:0006869)
0.1 1.4 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.1 0.5 GO:0010358 leaf shaping(GO:0010358)
0.1 1.1 GO:0030488 tRNA methylation(GO:0030488)
0.1 0.7 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.1 2.1 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 0.4 GO:0033517 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.1 0.9 GO:0006547 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.1 0.3 GO:0046683 response to organophosphorus(GO:0046683)
0.1 0.4 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.1 1.8 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 0.5 GO:0071174 mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032435) negative regulation of sister chromatid segregation(GO:0033046) negative regulation of mitotic sister chromatid segregation(GO:0033048) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) negative regulation of chromosome segregation(GO:0051985) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) negative regulation of proteasomal protein catabolic process(GO:1901799) negative regulation of metaphase/anaphase transition of cell cycle(GO:1902100) negative regulation of proteolysis involved in cellular protein catabolic process(GO:1903051) negative regulation of cellular protein catabolic process(GO:1903363) negative regulation of mitotic sister chromatid separation(GO:2000816)
0.1 0.6 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.1 0.3 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.1 0.2 GO:0031573 intra-S DNA damage checkpoint(GO:0031573)
0.1 1.7 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.1 0.5 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.1 2.5 GO:0009827 plant-type cell wall modification(GO:0009827)
0.0 1.6 GO:0010197 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.3 GO:2000027 regulation of leaf morphogenesis(GO:1901371) regulation of organ morphogenesis(GO:2000027)
0.0 1.0 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 1.2 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.2 GO:0019218 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) negative regulation of hormone metabolic process(GO:0032351) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.8 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.5 GO:0051553 flavone metabolic process(GO:0051552) flavone biosynthetic process(GO:0051553) flavonol metabolic process(GO:0051554) flavonol biosynthetic process(GO:0051555)
0.0 0.4 GO:0019856 pyrimidine nucleobase biosynthetic process(GO:0019856)
0.0 0.3 GO:0009819 drought recovery(GO:0009819)
0.0 0.8 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.9 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.0 0.7 GO:0009638 phototropism(GO:0009638)
0.0 0.8 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.0 0.4 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.4 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.6 GO:0051568 histone H3-K4 methylation(GO:0051568)
0.0 0.4 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.0 0.6 GO:0001934 positive regulation of protein phosphorylation(GO:0001934)
0.0 0.2 GO:0010589 leaf proximal/distal pattern formation(GO:0010589)
0.0 0.3 GO:0006183 GTP biosynthetic process(GO:0006183)
0.0 0.2 GO:0032352 positive regulation of auxin biosynthetic process(GO:0010601) positive regulation of hormone metabolic process(GO:0032352) positive regulation of hormone biosynthetic process(GO:0046886) positive regulation of auxin metabolic process(GO:0090355)
0.0 0.8 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.6 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.3 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 1.5 GO:0010051 xylem and phloem pattern formation(GO:0010051)
0.0 0.2 GO:0051952 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) amino acid export(GO:0032973) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.0 0.8 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.5 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.0 0.6 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.0 0.6 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 0.2 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.2 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.0 0.1 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.0 0.2 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.0 1.0 GO:0010311 lateral root formation(GO:0010311)
0.0 0.2 GO:0019632 shikimate metabolic process(GO:0019632)
0.0 0.1 GO:1990570 GDP-mannose transport(GO:0015784) purine nucleotide-sugar transmembrane transport(GO:0090480) GDP-mannose transmembrane transport(GO:1990570)
0.0 2.5 GO:0080167 response to karrikin(GO:0080167)
0.0 0.1 GO:0051329 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.3 GO:0080027 response to herbivore(GO:0080027)
0.0 0.4 GO:0015770 sucrose transport(GO:0015770)
0.0 0.3 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.1 GO:0042908 xenobiotic transport(GO:0042908)
0.0 1.1 GO:0010043 response to zinc ion(GO:0010043)
0.0 0.8 GO:0048825 cotyledon development(GO:0048825)
0.0 0.1 GO:0016444 somatic cell DNA recombination(GO:0016444) strand invasion(GO:0042148)
0.0 0.4 GO:0010089 xylem development(GO:0010089)
0.0 0.4 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.1 GO:0048833 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.0 0.3 GO:0032875 regulation of DNA endoreduplication(GO:0032875)
0.0 1.4 GO:0019932 second-messenger-mediated signaling(GO:0019932)
0.0 0.6 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.4 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.3 GO:1900864 mitochondrial mRNA modification(GO:0080156) mitochondrial RNA modification(GO:1900864)
0.0 0.1 GO:0010230 alternative respiration(GO:0010230)
0.0 1.2 GO:0034249 negative regulation of translation(GO:0017148) negative regulation of cellular amide metabolic process(GO:0034249)
0.0 0.2 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.0 0.5 GO:0006505 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 0.3 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.4 GO:0080154 regulation of fertilization(GO:0080154) regulation of double fertilization forming a zygote and endosperm(GO:0080155)
0.0 0.9 GO:0048544 cell recognition(GO:0008037) recognition of pollen(GO:0048544)
0.0 0.4 GO:0006739 NADP metabolic process(GO:0006739)
0.0 0.1 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.0 0.2 GO:0009630 gravitropism(GO:0009630)
0.0 0.5 GO:0016485 protein processing(GO:0016485)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 3.6 GO:0009897 external side of plasma membrane(GO:0009897)
0.6 2.4 GO:0009509 chromoplast(GO:0009509)
0.5 20.4 GO:0010319 stromule(GO:0010319)
0.3 0.9 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.3 0.8 GO:1990298 bub1-bub3 complex(GO:1990298)
0.2 2.3 GO:0016272 prefoldin complex(GO:0016272)
0.2 1.4 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.2 0.8 GO:1990752 cellulose synthase complex(GO:0010330) microtubule end(GO:1990752)
0.2 1.7 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.2 0.7 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.2 2.4 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.1 0.4 GO:0070382 exocytic vesicle(GO:0070382)
0.1 0.7 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.1 20.9 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 3.1 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 1.8 GO:0009986 cell surface(GO:0009986)
0.1 1.2 GO:0031209 SCAR complex(GO:0031209)
0.1 1.5 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.1 1.6 GO:0005880 nuclear microtubule(GO:0005880)
0.1 4.5 GO:0031977 thylakoid lumen(GO:0031977)
0.1 29.4 GO:0048046 apoplast(GO:0048046)
0.1 0.4 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.1 1.8 GO:0009531 secondary cell wall(GO:0009531)
0.1 0.6 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778)
0.1 1.8 GO:0005871 kinesin complex(GO:0005871)
0.1 0.5 GO:0070652 HAUS complex(GO:0070652)
0.1 1.5 GO:0009508 plastid chromosome(GO:0009508)
0.1 0.4 GO:0072588 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.1 0.2 GO:0030896 checkpoint clamp complex(GO:0030896)
0.1 29.4 GO:0009941 chloroplast envelope(GO:0009941)
0.1 1.0 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 1.1 GO:0016324 apical plasma membrane(GO:0016324)
0.0 6.9 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.5 GO:0044450 microtubule organizing center part(GO:0044450)
0.0 0.6 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 1.6 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.5 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.5 GO:0031305 integral component of mitochondrial inner membrane(GO:0031305)
0.0 0.4 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.5 GO:0030686 90S preribosome(GO:0030686)
0.0 0.6 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 1.6 GO:0016607 nuclear speck(GO:0016607)
0.0 2.4 GO:0022627 cytosolic small ribosomal subunit(GO:0022627)
0.0 2.5 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 4.6 GO:0005802 trans-Golgi network(GO:0005802)
0.0 0.6 GO:0015934 large ribosomal subunit(GO:0015934)
0.0 1.6 GO:0005615 extracellular space(GO:0005615)
0.0 0.4 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.6 GO:0000139 Golgi membrane(GO:0000139)
0.0 0.2 GO:0005720 nuclear heterochromatin(GO:0005720)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:1990465 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
1.0 13.7 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.8 2.3 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.7 23.8 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.7 2.1 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
0.7 5.6 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.6 1.7 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.6 2.3 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.5 2.1 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.5 1.5 GO:0010242 oxygen evolving activity(GO:0010242)
0.5 2.0 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.5 1.5 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.5 1.4 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.4 1.7 GO:0070402 NADPH binding(GO:0070402)
0.4 1.6 GO:0052924 trans-octaprenyltranstransferase activity(GO:0050347) all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity(GO:0052924)
0.4 2.1 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.3 0.9 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.3 1.5 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.3 0.6 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)
0.3 1.2 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.3 2.0 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.3 2.6 GO:0004096 catalase activity(GO:0004096)
0.3 1.4 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.2 0.9 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.2 1.6 GO:0008169 C-methyltransferase activity(GO:0008169)
0.2 0.9 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.2 0.7 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
0.2 0.9 GO:0016882 cyclo-ligase activity(GO:0016882)
0.2 0.9 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.2 1.5 GO:0016149 translation release factor activity, codon specific(GO:0016149)
0.2 0.9 GO:0004400 histidinol-phosphate transaminase activity(GO:0004400)
0.2 1.3 GO:0052654 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.2 1.0 GO:0016676 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.2 1.0 GO:0034432 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.2 1.0 GO:0016801 hydrolase activity, acting on ether bonds(GO:0016801)
0.2 0.6 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.2 0.8 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.2 0.6 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.2 1.2 GO:0034237 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.2 4.0 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.2 0.9 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.2 2.4 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.2 0.3 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.2 1.2 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.2 5.3 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.2 1.1 GO:0004372 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.2 0.9 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.2 1.1 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 1.2 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 3.1 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.1 0.6 GO:0016040 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.1 0.6 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 1.2 GO:0008083 growth factor activity(GO:0008083)
0.1 0.4 GO:0043812 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.1 0.7 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.1 0.4 GO:0005080 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.1 0.7 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.1 0.4 GO:0004150 dihydroneopterin aldolase activity(GO:0004150)
0.1 0.7 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.1 0.7 GO:0004049 anthranilate synthase activity(GO:0004049)
0.1 0.8 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 2.6 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.1 0.5 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.1 0.2 GO:0052381 tRNA dimethylallyltransferase activity(GO:0052381)
0.1 0.4 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.1 0.9 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.1 1.0 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.1 1.8 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.1 0.2 GO:0004860 protein kinase inhibitor activity(GO:0004860)
0.1 1.9 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.1 1.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.1 3.5 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.1 1.2 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.9 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.1 0.4 GO:0008175 tRNA methyltransferase activity(GO:0008175)
0.1 0.8 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.1 0.7 GO:0048487 beta-tubulin binding(GO:0048487)
0.1 0.4 GO:0047493 sphingomyelin synthase activity(GO:0033188) ceramide cholinephosphotransferase activity(GO:0047493)
0.1 0.4 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 3.3 GO:0005262 calcium channel activity(GO:0005262)
0.1 0.7 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 13.2 GO:0008017 microtubule binding(GO:0008017)
0.1 0.4 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 2.6 GO:0008378 galactosyltransferase activity(GO:0008378)
0.1 1.9 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 0.8 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.1 2.8 GO:0005179 hormone activity(GO:0005179)
0.1 2.6 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.1 2.2 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.4 GO:0000150 recombinase activity(GO:0000150)
0.1 0.5 GO:0019825 oxygen binding(GO:0019825)
0.1 0.7 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 1.2 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.1 1.9 GO:0008810 cellulase activity(GO:0008810)
0.1 0.5 GO:0032977 membrane insertase activity(GO:0032977)
0.1 2.8 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 0.3 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.1 0.4 GO:0017091 AU-rich element binding(GO:0017091)
0.1 2.0 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.1 1.7 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 1.6 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 1.3 GO:0008146 sulfotransferase activity(GO:0008146)
0.1 0.6 GO:0009378 four-way junction helicase activity(GO:0009378)
0.1 0.7 GO:0016278 lysine N-methyltransferase activity(GO:0016278) protein-lysine N-methyltransferase activity(GO:0016279)
0.1 0.9 GO:0016759 cellulose synthase activity(GO:0016759)
0.1 0.7 GO:0008173 RNA methyltransferase activity(GO:0008173)
0.1 0.3 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 3.9 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.1 0.7 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 1.1 GO:0030276 clathrin binding(GO:0030276)
0.1 0.6 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.1 0.3 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.1 0.4 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.1 0.2 GO:0005353 fructose transmembrane transporter activity(GO:0005353)
0.1 0.6 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.1 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.4 GO:0017048 Rho GTPase binding(GO:0017048)
0.0 0.7 GO:0004743 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 1.0 GO:0030145 manganese ion binding(GO:0030145)
0.0 0.4 GO:0019158 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.9 GO:0010333 terpene synthase activity(GO:0010333)
0.0 0.5 GO:0030674 protein binding, bridging(GO:0030674)
0.0 4.5 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 1.4 GO:0015081 sodium ion transmembrane transporter activity(GO:0015081)
0.0 0.7 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.8 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.4 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.5 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.2 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.0 0.5 GO:0016307 phosphatidylinositol phosphate kinase activity(GO:0016307) 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.4 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.0 8.6 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 1.2 GO:0010181 FMN binding(GO:0010181)
0.0 0.4 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.2 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 1.0 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.9 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.1 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.5 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.0 0.5 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.2 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.0 0.4 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.1 GO:0005458 GDP-mannose transmembrane transporter activity(GO:0005458)
0.0 0.3 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.0 0.3 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.0 4.5 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 2.3 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.1 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.0 0.1 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.0 1.0 GO:0070001 aspartic-type peptidase activity(GO:0070001)
0.0 0.2 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.0 0.4 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.2 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 0.4 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0009916 alternative oxidase activity(GO:0009916)
0.0 0.1 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.2 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.9 GO:0030247 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.4 GO:0097602 cullin family protein binding(GO:0097602)
0.0 1.1 GO:0038023 signaling receptor activity(GO:0038023)
0.0 0.3 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.1 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.0 0.4 GO:0051087 chaperone binding(GO:0051087)
0.0 1.2 GO:0030246 carbohydrate binding(GO:0030246)
0.0 0.1 GO:0003730 mRNA 3'-UTR binding(GO:0003730)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.1 16.5 PID CMYB PATHWAY C-MYB transcription factor network
0.8 3.2 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.2 0.7 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
4.0 24.0 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
1.2 3.7 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.2 0.7 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.1 1.1 REACTOME DEVELOPMENTAL BIOLOGY Genes involved in Developmental Biology
0.1 0.3 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.0 0.1 REACTOME PI METABOLISM Genes involved in PI Metabolism
0.0 0.4 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production