GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G09540
|
AT1G09540 | myb domain protein 61 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MYB61 | arTal_v1_Chr1_+_3086101_3086101 | 0.44 | 2.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_-_17166032_17166032 Show fit | 5.01 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
|
arTal_v1_Chr5_+_5658416_5658416 Show fit | 4.87 |
AT5G17220.1
|
glutathione S-transferase phi 12 |
|
arTal_v1_Chr1_-_30053936_30053936 Show fit | 4.84 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
arTal_v1_Chr1_+_5290747_5290747 Show fit | 4.40 |
AT1G15380.2
|
Lactoylglutathione lyase / glyoxalase I family protein |
|
arTal_v1_Chr3_+_17724400_17724400 Show fit | 4.40 |
AT3G48020.1
|
hypothetical protein |
|
arTal_v1_Chr1_+_5290582_5290582 Show fit | 4.30 |
AT1G15380.1
|
Lactoylglutathione lyase / glyoxalase I family protein |
|
arTal_v1_Chr5_-_2176446_2176446 Show fit | 4.20 |
AT5G07010.1
|
sulfotransferase 2A |
|
arTal_v1_Chr3_+_11033665_11033665 Show fit | 4.17 |
AT3G29035.1
|
NAC domain containing protein 3 |
|
arTal_v1_Chr2_-_18646606_18646606 Show fit | 4.07 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
arTal_v1_Chr5_+_579744_579852 Show fit | 3.94 |
AT5G02580.1
AT5G02580.3 AT5G02580.2 |
argininosuccinate lyase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 25.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.1 | 13.4 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) |
0.3 | 12.8 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
0.1 | 10.9 | GO:0010150 | leaf senescence(GO:0010150) organ senescence(GO:0010260) |
0.0 | 10.6 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
0.2 | 9.4 | GO:0009694 | jasmonic acid metabolic process(GO:0009694) |
0.3 | 7.5 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
1.5 | 7.4 | GO:1900384 | regulation of flavonol biosynthetic process(GO:1900384) |
0.0 | 7.1 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
0.1 | 6.8 | GO:0042538 | hyperosmotic salinity response(GO:0042538) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.3 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
0.1 | 8.0 | GO:0000325 | plant-type vacuole(GO:0000325) |
0.5 | 7.3 | GO:0005801 | cis-Golgi network(GO:0005801) |
0.9 | 6.1 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
0.1 | 5.5 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 5.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.1 | 5.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.2 | 4.5 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.1 | 4.4 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
0.2 | 4.2 | GO:0005771 | multivesicular body(GO:0005771) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 20.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
0.1 | 18.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.0 | 15.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
0.1 | 12.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.1 | 8.0 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
1.0 | 7.1 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
0.1 | 6.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.1 | 6.2 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
0.1 | 6.0 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.5 | 5.7 | GO:0102360 | daphnetin 3-O-glucosyltransferase activity(GO:0102360) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.2 | 0.5 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.1 | 0.5 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.1 | 0.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 0.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.2 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.4 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
0.2 | 2.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 1.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.2 | 0.8 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
0.1 | 0.7 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
0.1 | 0.3 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |
0.1 | 0.3 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.0 | 0.2 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |