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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G09530_AT5G61380

Z-value: 1.05

Transcription factors associated with AT1G09530_AT5G61380

Gene Symbol Gene ID Gene Info
AT1G09530
AT1G09530 phytochrome interacting factor 3
AT5G61380
AT5G61380 CCT motif -containing response regulator protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TOC1arTal_v1_Chr5_+_24674963_246749630.926.0e-12Click!
PIF3arTal_v1_Chr1_+_3076401_30764010.893.1e-10Click!

Activity profile of AT1G09530_AT5G61380 motif

Sorted Z-values of AT1G09530_AT5G61380 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_579744 7.28 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
Chr1_-_28318362 6.20 AT1G75450.1
AT1G75450.2
CKX5
cytokinin oxidase 5
Chr4_-_16942060 5.85 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Chr1_+_26038905 5.68 AT1G69260.1
AFP1
ABI five binding protein
Chr3_-_6804114 4.97 AT3G19580.2
ZF2
zinc-finger protein 2
Chr3_-_6804296 4.87 AT3G19580.1
ZF2
zinc-finger protein 2
Chr1_-_467873 4.76 AT1G02340.2
AT1G02340.1
HFR1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_761013 4.50 AT2G02710.2
AT2G02710.3
AT2G02710.4
AT2G02710.1
PLPB
PAS/LOV protein B
Chr1_+_29099839 4.29 AT1G77450.1
NAC032
NAC domain containing protein 32
Chr5_-_23501416 3.80 AT5G58070.1
TIL
temperature-induced lipocalin
Chr5_-_8145252 3.71 AT5G24090.1
CHIA
chitinase A
Chr1_+_486800 3.61 AT1G02400.1
AT1G02400.2
GA2OX6
gibberellin 2-oxidase 6
Chr5_-_3395999 3.38 AT5G10740.2
AT5G10740
Protein phosphatase 2C family protein
Chr5_-_3396200 3.27 AT5G10740.1
AT5G10740
Protein phosphatase 2C family protein
Chr2_-_8138142 3.24 AT2G18780.1
AT2G18780
F-box and associated interaction domains-containing protein
Chr1_-_2013459 2.90 AT1G06570.1
AT1G06570.2
PDS1
4-hydroxyphenylpyruvate dioxygenase
Chr3_-_387051 2.86 AT3G02140.1
TMAC2
AFP2 (ABI five-binding protein 2) family protein
Chr5_-_3595003 2.62 AT5G11260.2
AT5G11260.1
HY5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr1_+_3019639 2.12 AT1G09350.1
GolS3
galactinol synthase 3
Chr4_+_12080060 2.07 AT4G23050.2
AT4G23050
PAS domain-containing protein tyrosine kinase family protein
Chr3_+_23168454 2.05 AT3G62650.1
AT3G62650
hypothetical protein
Chr4_+_12079859 2.03 AT4G23050.1
AT4G23050
PAS domain-containing protein tyrosine kinase family protein
Chr2_-_11754028 2.02 AT2G27500.2
AT2G27500.1
AT2G27500
Glycosyl hydrolase superfamily protein
Chr3_+_23168061 2.00 AT3G62650.2
AT3G62650
hypothetical protein
Chr1_+_3020221 1.87 AT1G09350.2
GolS3
galactinol synthase 3
Chr5_-_19218007 1.78 AT5G47370.1
HAT2
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Chr5_+_4441858 1.57 AT5G13760.1
AT5G13760
Plasma-membrane choline transporter family protein
Chr2_-_11753767 1.55 AT2G27500.3
AT2G27500
Glycosyl hydrolase superfamily protein
Chr4_-_13016235 1.46 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
Chr2_+_18839588 1.44 AT2G45740.3
AT2G45740.1
PEX11D
peroxin 11D
Chr2_+_18839435 1.42 AT2G45740.2
PEX11D
peroxin 11D
Chr3_-_3923155 1.26 AT3G12300.1
BUG22
cilia/flagella-associated protein
Chr5_+_25765712 1.20 AT5G64440.1
FAAH
fatty acid amide hydrolase
Chr2_+_762927 1.16 AT2G02720.1
AT2G02720
Pectate lyase family protein
Chr4_+_13024498 0.97 AT4G25500.5
AT4G25500.2
AT4G25500.3
AT4G25500.1
AT4G25500.6
AT4G25500.4
RS40
arginine/serine-rich splicing factor 35
Chr1_+_25497145 0.96 AT1G68020.3
AT1G68020.1
ATTPS6
UDP-Glycosyltransferase / trehalose-phosphatase family protein
Chr1_+_25496928 0.84 AT1G68020.2
ATTPS6
UDP-Glycosyltransferase / trehalose-phosphatase family protein
Chr4_+_13025834 0.77 AT4G25500.8
RS40
arginine/serine-rich splicing factor 35
Chr4_+_13024955 0.75 AT4G25500.7
RS40
arginine/serine-rich splicing factor 35
Chr2_+_8139756 0.69 AT2G18790.2
AT2G18790.1
PHYB
phytochrome B
Chr3_+_22329048 0.66 AT3G60400.1
SHOT1
Mitochondrial transcription termination factor family protein
Chr1_-_7267354 0.65 AT1G20890.2
AT1G20890.1
AT1G20890
caveolin-1 protein
Chr2_+_17474527 0.42 AT2G41880.2
AT2G41880.1
AT2G41880.4
AT2G41880.3
AT2G41880.5
AT2G41880.6
AT2G41880.7
AT2G41880.8
AT2G41880.9
GK-1
guanylate kinase 1
Chr2_+_17886101 0.41 AT2G43010.1
AT2G43010.3
AT2G43010.4
PIF4
phytochrome interacting factor 4
Chr2_+_17886427 0.38 AT2G43010.2
PIF4
phytochrome interacting factor 4
Chr2_+_17886798 0.38 AT2G43010.5
PIF4
phytochrome interacting factor 4

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530_AT5G61380

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 3.8 GO:0006883 cellular sodium ion homeostasis(GO:0006883) chloride ion homeostasis(GO:0055064)
1.0 6.2 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.7 0.7 GO:0010617 circadian regulation of calcium ion oscillation(GO:0010617)
0.5 2.9 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.5 3.6 GO:0045487 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.4 2.9 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.4 2.9 GO:0044375 regulation of peroxisome size(GO:0044375)
0.3 3.7 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.3 4.3 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.2 4.8 GO:0009785 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.2 2.6 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.2 1.2 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.2 2.5 GO:0031053 primary miRNA processing(GO:0031053)
0.2 9.8 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.1 1.2 GO:0034308 primary alcohol metabolic process(GO:0034308)
0.1 4.0 GO:0006012 galactose metabolic process(GO:0006012)
0.1 1.8 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.1 1.8 GO:0009641 shade avoidance(GO:0009641)
0.0 6.6 GO:0006470 protein dephosphorylation(GO:0006470)
0.0 5.7 GO:0009738 abscisic acid-activated signaling pathway(GO:0009738)
0.0 1.5 GO:0009631 cold acclimation(GO:0009631)
0.0 1.2 GO:0045490 pectin catabolic process(GO:0045490)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.5 GO:0010445 nuclear dicing body(GO:0010445)
0.2 2.9 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.2 3.8 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 3.6 GO:0046658 anchored component of plasma membrane(GO:0046658)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.9 6.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.4 4.0 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.2 0.7 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.2 3.6 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.2 3.7 GO:0004568 chitinase activity(GO:0004568)
0.1 2.9 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.1 0.4 GO:0004385 guanylate kinase activity(GO:0004385)
0.1 1.8 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 4.1 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.1 6.6 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 1.2 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 4.8 GO:0000989 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 1.2 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 17.4 GO:0003690 double-stranded DNA binding(GO:0003690)
0.0 1.8 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)