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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G09530
Z-value: 1.38
Transcription factors associated with AT1G09530
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G09530
|
AT1G09530 | phytochrome interacting factor 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PIF3 | arTal_v1_Chr1_+_3075768_3075768 | -0.24 | 2.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 3.65 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 2.93 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 2.77 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.74 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 2.35 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 2.32 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr1_-_983544_983544 Show fit | 2.22 |
AT1G03870.1
|
FASCICLIN-like arabinoogalactan 9 |
|
| arTal_v1_Chr4_+_17243583_17243583 Show fit | 2.09 |
AT4G36540.2
AT4G36540.1 |
BR enhanced expression 2 |
|
| arTal_v1_Chr2_-_7954680_7954785 Show fit | 2.04 |
AT2G18300.1
AT2G18300.3 AT2G18300.2 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|
| arTal_v1_Chr2_-_15137012_15137012 Show fit | 2.00 |
AT2G36050.1
|
ovate family protein 15 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G09530
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.0 | GO:0042335 | cuticle development(GO:0042335) |
| 0.2 | 4.6 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.2 | 4.1 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
| 0.1 | 3.8 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.2 | 3.6 | GO:0015840 | urea transport(GO:0015840) |
| 0.4 | 3.5 | GO:0032876 | negative regulation of DNA endoreduplication(GO:0032876) |
| 0.3 | 3.0 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.0 | 2.9 | GO:0010015 | root morphogenesis(GO:0010015) |
| 0.2 | 2.4 | GO:0052541 | plant-type cell wall cellulose metabolic process(GO:0052541) |
| 0.0 | 2.4 | GO:0046777 | protein autophosphorylation(GO:0046777) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 9.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 8.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 4.4 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.3 | 3.6 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.6 | 1.8 | GO:0016328 | lateral plasma membrane(GO:0016328) |
| 0.2 | 1.4 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 1.3 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.1 | 1.1 | GO:0009522 | photosystem I(GO:0009522) |
| 0.0 | 1.1 | GO:0000152 | nuclear ubiquitin ligase complex(GO:0000152) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.0 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.0 | 4.6 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.1 | 3.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 1.2 | 3.6 | GO:0015204 | ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204) |
| 0.2 | 3.5 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 2.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.8 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 2.5 | GO:0008289 | lipid binding(GO:0008289) |
| 0.2 | 2.2 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.7 | 2.0 | GO:0043425 | bHLH transcription factor binding(GO:0043425) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 0.7 | REACTOME TRANS GOLGI NETWORK VESICLE BUDDING | Genes involved in trans-Golgi Network Vesicle Budding |
| 0.2 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.5 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.3 | 0.3 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |