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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G09530

Z-value: 1.38

Transcription factors associated with AT1G09530

Gene Symbol Gene ID Gene Info
AT1G09530
AT1G09530 phytochrome interacting factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PIF3arTal_v1_Chr1_+_3075768_3075768-0.242.3e-01Click!

Activity profile of AT1G09530 motif

Sorted Z-values of AT1G09530 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_5505360 3.65 AT3G16240.1
DELTA-TIP
delta tonoplast integral protein
Chr2_+_2763449 2.93 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr3_-_21523375 2.77 AT3G58120.2
AT3G58120.1
BZIP61
Basic-leucine zipper (bZIP) transcription factor family protein
Chr5_+_8863224 2.74 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr5_+_625254 2.35 AT5G02760.1
AT5G02760
Protein phosphatase 2C family protein
Chr2_+_9844134 2.32 AT2G23130.1
AT2G23130.2
AGP17
arabinogalactan protein 17
Chr1_-_983544 2.22 AT1G03870.1
FLA9
FASCICLIN-like arabinoogalactan 9
Chr4_+_17243583 2.09 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
Chr2_-_7954680 2.04 AT2G18300.1
AT2G18300.3
AT2G18300.2
HBI1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_15137012 2.00 AT2G36050.1
OFP15
ovate family protein 15
Chr5_+_3889906 1.96 AT5G12050.1
AT5G12050
rho GTPase-activating protein
Chr1_-_6999839 1.92 AT1G20190.1
EXPA11
expansin 11
Chr1_+_9740508 1.90 AT1G27950.1
LTPG1
glycosylphosphatidylinositol-anchored lipid protein transfer 1
Chr1_-_6999523 1.77 AT1G20190.2
EXPA11
expansin 11
Chr1_-_227302 1.73 AT1G01620.2
PIP1C
plasma membrane intrinsic protein 1C
Chr1_-_227543 1.73 AT1G01620.1
PIP1C
plasma membrane intrinsic protein 1C
Chr3_-_4744263 1.72 AT3G14240.1
AT3G14240
Subtilase family protein
Chr3_+_3698658 1.70 AT3G11700.1
FLA18
FASCICLIN-like arabinogalactan protein 18 precursor
Chr3_-_8290164 1.69 AT3G23230.1
TDR1
Integrase-type DNA-binding superfamily protein
Chr4_-_16583075 1.67 AT4G34760.1
AT4G34760
SAUR-like auxin-responsive protein family
Chr1_-_1169034 1.64 AT1G04360.1
AT1G04360
RING/U-box superfamily protein
Chr3_-_2130451 1.62 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
Chr1_-_4265156 1.61 AT1G12500.1
AT1G12500
Nucleotide-sugar transporter family protein
Chr5_+_4087689 1.58 AT5G12940.1
AT5G12940
Leucine-rich repeat (LRR) family protein
Chr2_-_14302496 1.53 AT2G33800.1
EMB3113
Ribosomal protein S5 family protein
Chr3_-_19467455 1.49 AT3G52500.1
AT3G52500
Eukaryotic aspartyl protease family protein
Chr5_+_22474142 1.48 AT5G55480.1
SVL1
SHV3-like 1
Chr5_-_5072492 1.48 AT5G15580.1
LNG1
longifolia1
Chr4_+_14192569 1.43 AT4G28720.1
YUC8
Flavin-binding monooxygenase family protein
Chr3_-_15617149 1.41 AT3G43720.2
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_3190321 1.40 AT5G10170.1
MIPS3
myo-inositol-1-phosphate synthase 3
Chr1_-_28581315 1.40 AT1G76160.1
sks5
SKU5 similar 5
Chr3_-_15617309 1.39 AT3G43720.1
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_-_14204061 1.37 AT4G28750.1
PSAE-1
Photosystem I reaction centre subunit IV / PsaE protein
Chr1_-_10306587 1.36 AT1G29450.2
AT1G29450.1
AT1G29450
SAUR-like auxin-responsive protein family
Chr4_-_9157133 1.33 AT4G16155.1
AT4G16155
dihydrolipoamide dehydrogenase
Chr3_-_1832190 1.32 AT3G06070.1
AT3G06070
hypothetical protein
Chr2_+_6399621 1.31 AT2G14890.2
AGP9
arabinogalactan protein 9
Chr5_+_7168106 1.30 AT5G21100.1
AT5G21100
Plant L-ascorbate oxidase
Chr3_-_4042075 1.30 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr2_+_9636346 1.29 AT2G22670.1
AT2G22670.4
AT2G22670.2
AT2G22670.5
AT2G22670.3
IAA8
indoleacetic acid-induced protein 8
Chr5_+_5975780 1.26 AT5G18060.1
SAUR23
SAUR-like auxin-responsive protein family
Chr1_-_12053935 1.24 AT1G33240.2
GTL1
GT-2-like 1
Chr1_-_12054753 1.23 AT1G33240.1
AT1G33240.3
GTL1
GT-2-like 1
Chr3_+_8194606 1.22 AT3G23050.1
AT3G23050.3
AT3G23050.2
IAA7
indole-3-acetic acid 7
Chr1_-_24033600 1.15 AT1G64670.1
AT1G64670.3
AT1G64670.2
BDG1
alpha/beta-Hydrolases superfamily protein
Chr2_+_6399405 1.15 AT2G14890.1
AGP9
arabinogalactan protein 9
Chr1_+_4084162 1.15 AT1G12080.1
AT1G12080.2
AT1G12080
Vacuolar calcium-binding protein-like protein
Chr1_+_24035941 1.14 AT1G64680.1
AT1G64680.2
AT1G64680
beta-carotene isomerase D27
Chr3_-_2137012 1.14 AT3G06770.1
AT3G06770.5
AT3G06770
Pectin lyase-like superfamily protein
Chr3_+_22745514 1.14 AT3G61470.1
LHCA2
photosystem I light harvesting complex protein
Chr3_-_2137280 1.13 AT3G06770.4
AT3G06770.3
AT3G06770
Pectin lyase-like superfamily protein
Chr4_+_15583332 1.12 AT4G32280.1
AT4G32280.2
AT4G32280.3
IAA29
indole-3-acetic acid inducible 29
Chr2_-_17837618 1.11 AT2G42870.1
PAR1
phy rapidly regulated 1
Chr4_-_9305763 1.11 AT4G16515.1
AT4G16515.2
RGF6
root meristem growth factor
Chr5_+_25159208 1.10 AT5G62670.1
HA11
H[+]-ATPase 11
Chr5_+_9157142 1.08 AT5G26200.1
AT5G26200
Mitochondrial substrate carrier family protein
Chr5_-_4582856 1.07 AT5G14210.1
AT5G14210.2
AT5G14210.3
AT5G14210
Leucine-rich repeat protein kinase family protein
Chr4_+_16591179 1.06 AT4G34770.1
AT4G34770
SAUR-like auxin-responsive protein family
Chr3_-_19442427 1.05 AT3G52450.1
PUB22
plant U-box 22
Chr3_-_8181853 1.04 AT3G23030.1
IAA2
indole-3-acetic acid inducible 2
Chr1_+_19434480 1.04 AT1G52190.1
AT1G52190
Major facilitator superfamily protein
Chr1_-_7040231 1.03 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr3_-_8182095 1.02 AT3G23030.2
IAA2
indole-3-acetic acid inducible 2
Chr3_-_21411904 1.01 AT3G57800.2
AT3G57800
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_21411612 1.01 AT3G57800.1
AT3G57800
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_11663186 1.00 AT4G22010.1
sks4
SKU5 similar 4
Chr3_+_256295 1.00 AT3G01690.1
AT3G01690
alpha/beta-Hydrolases superfamily protein
Chr3_+_16569051 0.98 AT3G45230.1
AT3G45230
hydroxyproline-rich glycoprotein family protein
Chr2_+_11041331 0.95 AT2G25900.2
AT2G25900.1
ATCTH
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr1_-_25472346 0.94 AT1G67910.2
AT1G67910
hypothetical protein
Chr1_-_25472577 0.94 AT1G67910.1
AT1G67910
hypothetical protein
Chr2_+_8431363 0.93 AT2G19460.2
AT2G19460.1
AT2G19460
DUF3511 domain protein (DUF3511)
Chr3_-_1767620 0.93 AT3G05910.2
AT3G05910
Pectinacetylesterase family protein
Chr5_-_3963624 0.92 AT5G12250.1
TUB6
beta-6 tubulin
Chr3_-_1767843 0.92 AT3G05910.1
AT3G05910
Pectinacetylesterase family protein
Chr2_+_7301334 0.92 AT2G16850.1
PIP2%3B8
plasma membrane intrinsic protein 2;8
Chr2_+_12703469 0.91 AT2G29730.1
UGT71D1
UDP-glucosyl transferase 71D1
Chr5_-_5766246 0.90 AT5G17490.1
RGL3
RGA-like protein 3
Chr4_+_7480556 0.90 AT4G12690.2
AT4G12690.1
AT4G12690
DUF868 family protein (DUF868)
Chr3_+_22786022 0.89 AT3G61580.1
SLD1
Fatty acid/sphingolipid desaturase
Chr1_+_26742940 0.87 AT1G70940.1
PIN3
Auxin efflux carrier family protein
Chr1_-_8559066 0.87 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_19930798 0.87 AT3G53800.1
AT3G53800.2
Fes1B
Fes1B
Chr1_-_6860376 0.86 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr1_+_4877506 0.86 AT1G14280.1
PKS2
phytochrome kinase substrate 2
Chr1_+_195812 0.85 AT1G01540.1
AT1G01540
Protein kinase superfamily protein
Chr5_+_17550179 0.85 AT5G43700.1
ATAUX2-11
AUX/IAA transcriptional regulator family protein
Chr1_+_195645 0.85 AT1G01540.2
AT1G01540
Protein kinase superfamily protein
Chr4_-_12937236 0.84 AT4G25260.1
AT4G25260
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_+_15875342 0.84 AT4G32890.1
GATA9
GATA transcription factor 9
Chr1_-_28551836 0.82 AT1G76090.1
SMT3
sterol methyltransferase 3
Chr2_+_16927501 0.81 AT2G40530.1
AT2G40530
transmembrane protein
Chr1_+_24257216 0.80 AT1G65310.1
XTH17
xyloglucan endotransglucosylase/hydrolase 17
Chr3_-_399798 0.80 AT3G02170.2
AT3G02170.3
LNG2
longifolia2
Chr2_-_15066001 0.80 AT2G35880.2
AT2G35880.1
AT2G35880.3
AT2G35880
TPX2 (targeting protein for Xklp2) protein family
Chr3_-_3862498 0.80 AT3G12120.2
FAD2
fatty acid desaturase 2
Chr1_+_24257054 0.80 AT1G65310.2
XTH17
xyloglucan endotransglucosylase/hydrolase 17
Chr1_+_30311527 0.78 AT1G80640.1
AT1G80640.2
AT1G80640
Protein kinase superfamily protein
Chr3_-_399960 0.77 AT3G02170.1
LNG2
longifolia2
Chr2_+_15818082 0.76 AT2G37720.1
TBL15
TRICHOME BIREFRINGENCE-LIKE 15
Chr1_-_28064771 0.76 AT1G74690.1
IQD31
IQ-domain 31
Chr3_-_22811024 0.76 AT3G61640.1
AGP20
arabinogalactan protein 20
Chr5_+_5223934 0.76 AT5G16000.1
NIK1
NSP-interacting kinase 1
Chr3_+_5264001 0.75 AT3G15540.1
IAA19
indole-3-acetic acid inducible 19
Chr3_-_2137641 0.74 AT3G06770.2
AT3G06770
Pectin lyase-like superfamily protein
Chr1_+_17863660 0.74 AT1G48330.1
AT1G48330
SsrA-binding protein
Chr3_-_3863250 0.74 AT3G12120.1
FAD2
fatty acid desaturase 2
Chr5_-_22991530 0.74 AT5G56860.1
GNC
GATA type zinc finger transcription factor family protein
Chr1_-_6859908 0.73 AT1G19835.2
AT1G19835
filament-like protein (DUF869)
Chr4_+_17515042 0.73 AT4G37220.1
AT4G37220
Cold acclimation protein WCOR413 family
Chr5_+_17798262 0.73 AT5G44190.2
AT5G44190.1
GLK2
GOLDEN2-like 2
Chr1_-_6860059 0.73 AT1G19835.5
AT1G19835
filament-like protein (DUF869)
Chr2_+_14066125 0.72 AT2G33180.1
AT2G33180
hypothetical protein
Chr3_+_5748497 0.72 AT3G16850.1
AT3G16850
Pectin lyase-like superfamily protein
Chr5_-_23785512 0.72 AT5G58900.1
AT5G58900
Homeodomain-like transcriptional regulator
Chr4_-_13460105 0.71 AT4G26690.1
SHV3
PLC-like phosphodiesterase family protein
Chr1_-_20668817 0.71 AT1G55360.1
AT1G55360
tRNA-splicing ligase (DUF239)
Chr1_+_29345851 0.71 AT1G78040.2
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_29345662 0.71 AT1G78040.3
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr4_-_1407402 0.70 AT4G03190.1
GRH1
GRR1-like protein 1
Chr5_-_18021508 0.68 AT5G44670.1
GALS2
glycosyltransferase family protein (DUF23)
Chr5_+_3193017 0.68 AT5G10180.1
SULTR2%3B1
slufate transporter 2;1
Chr1_+_29344539 0.67 AT1G78040.1
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_29871326 0.67 AT1G79420.1
AT1G79420
C-type mannose receptor (DUF620)
Chr2_+_18883377 0.66 AT2G45890.1
ROPGEF4
RHO guanyl-nucleotide exchange factor 4
Chr1_-_3820887 0.65 AT1G11350.1
SD1-13
S-domain-1 13
Chr3_-_6901334 0.64 AT3G19850.1
AT3G19850
Phototropic-responsive NPH3 family protein
Chr1_-_28117405 0.63 AT1G74840.2
AT1G74840.1
AT1G74840
Homeodomain-like superfamily protein
Chr1_-_8842334 0.62 AT1G25230.1
AT1G25230.2
AT1G25230.3
AT1G25230
Calcineurin-like metallo-phosphoesterase superfamily protein
Chr1_-_22885052 0.61 AT1G61900.3
AT1G61900.2
AT1G61900.1
AT1G61900
hypothetical protein
Chr5_-_20236195 0.60 AT5G49800.2
AT5G49800.1
AT5G49800
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr2_-_9326096 0.60 AT2G21880.3
AT2G21880.4
RAB7A
RAB GTPase homolog 7A
Chr4_-_17640925 0.60 AT4G37540.1
LBD39
LOB domain-containing protein 39
Chr1_+_25558794 0.59 AT1G68190.2
AT1G68190.3
BBX27
B-box zinc finger family protein
Chr2_+_6404131 0.56 AT2G14900.1
AT2G14900
Gibberellin-regulated family protein
Chr1_-_18626441 0.56 AT1G50280.1
AT1G50280.2
AT1G50280
Phototropic-responsive NPH3 family protein
Chr1_+_25559245 0.55 AT1G68190.1
BBX27
B-box zinc finger family protein
Chr3_+_9843460 0.55 AT3G26760.1
AT3G26760
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_2388675 0.55 AT3G07470.2
AT3G07470.1
AT3G07470.3
AT3G07470
transmembrane protein, putative (Protein of unknown function, DUF538)
Chr2_-_9326321 0.54 AT2G21880.2
AT2G21880.1
RAB7A
RAB GTPase homolog 7A
Chr1_-_13714 0.54 AT1G01030.2
AT1G01030.1
NGA3
AP2/B3-like transcriptional factor family protein
Chr2_+_9792166 0.54 AT2G23000.2
AT2G23000.1
scpl10
serine carboxypeptidase-like 10
Chr4_-_17334355 0.53 AT4G36780.1
BEH2
BES1/BZR1 homolog 2
Chr5_-_21285366 0.53 AT5G52430.1
AT5G52430
hydroxyproline-rich glycoprotein family protein
Chr2_+_18524311 0.53 AT2G44920.2
AT2G44920.1
AT2G44920
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_8112614 0.52 AT3G22890.1
APS1
ATP sulfurylase 1
Chr5_-_20345302 0.51 AT5G50000.2
AT5G50000.1
AT5G50000
Protein kinase superfamily protein
Chr5_+_22369007 0.50 AT5G55120.1
VTC5
GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5)
Chr2_+_18119873 0.50 AT2G43710.1
AT2G43710.2
SSI2
Plant stearoyl-acyl-carrier-protein desaturase family protein
Chr2_+_13497118 0.49 AT2G31750.1
AT2G31750.2
UGT74D1
UDP-glucosyl transferase 74D1
Chr4_-_13069762 0.49 AT4G25620.1
AT4G25620
hydroxyproline-rich glycoprotein family protein
Chr2_-_17800072 0.48 AT2G42770.1
AT2G42770
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Chr3_-_193537 0.47 AT3G01490.2
AT3G01490
Protein kinase superfamily protein
Chr3_-_2843781 0.47 AT3G09260.1
PYK10
Glycosyl hydrolase superfamily protein
Chr3_-_193721 0.47 AT3G01490.1
AT3G01490
Protein kinase superfamily protein
Chr1_+_3849201 0.47 AT1G11440.1
AT1G11440
hypothetical protein
Chr2_+_16474923 0.46 AT2G39460.1
RPL23AA
ribosomal protein L23AA
Chr4_+_17785254 0.46 AT4G37820.1
AT4G37820.2
AT4G37820
transmembrane protein
Chr2_+_16474149 0.46 AT2G39460.2
RPL23AA
ribosomal protein L23AA
Chr1_-_28383769 0.46 AT1G75590.1
AT1G75590
SAUR-like auxin-responsive protein family
Chr2_-_16346769 0.46 AT2G39180.1
CCR2
CRINKLY4 related 2
Chr4_+_15221843 0.45 AT4G31360.1
AT4G31360
selenium binding protein
Chr1_+_28335502 0.45 AT1G75490.1
AT1G75490
Integrase-type DNA-binding superfamily protein
Chr5_+_1150886 0.45 AT5G04190.1
PKS4
phytochrome kinase substrate 4
Chr1_+_28241011 0.45 AT1G75240.1
HB33
homeobox protein 33
Chr4_-_8415605 0.45 AT4G14680.2
AT4G14680.1
APS3
Pseudouridine synthase/archaeosine transglycosylase-like family protein
Chr2_+_9684562 0.45 AT2G22770.1
NAI1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_2633663 0.44 AT3G08670.1
AT3G08670
serine/arginine repetitive matrix-like protein
Chr5_-_5662466 0.44 AT5G17230.2
AT5G17230.4
PSY
PHYTOENE SYNTHASE
Chr5_+_1536057 0.44 AT5G05180.2
AT5G05180.1
AT5G05180.3
AT5G05180
myosin heavy chain, striated protein
Chr2_-_19361162 0.44 AT2G47160.2
BOR1
HCO3- transporter family
Chr5_-_5662865 0.44 AT5G17230.3
AT5G17230.1
PSY
PHYTOENE SYNTHASE
Chr2_-_19361328 0.44 AT2G47160.1
BOR1
HCO3- transporter family
Chr3_-_5045520 0.44 AT3G14980.4
AT3G14980.5
AT3G14980.2
AT3G14980.1
AT3G14980.3
ROS4
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
Chr2_-_13185973 0.43 AT2G30980.1
SKdZeta
SHAGGY-related protein kinase dZeta
Chr4_+_12012408 0.43 AT4G22910.1
FZR2
FIZZY-related 2
Chr1_+_27402814 0.43 AT1G72820.1
AT1G72820.2
AT1G72820
Mitochondrial substrate carrier family protein
Chr1_-_1637914 0.42 AT1G05530.1
UGT75B2
UDP-glucosyl transferase 75B2
Chr5_+_1319074 0.42 AT5G04590.1
SIR
sulfite reductase
Chr1_-_7662725 0.42 AT1G21830.1
AT1G21830
hypothetical protein
Chr1_+_2105048 0.42 AT1G06850.1
AT1G06850.2
bZIP52
basic leucine-zipper 52
Chr3_+_18916014 0.41 AT3G50890.1
HB28
homeobox protein 28
Chr1_+_16831016 0.41 AT1G44318.1
hemb2
Aldolase superfamily protein
Chr2_-_14644355 0.41 AT2G34710.1
PHB
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr4_+_7617428 0.41 AT4G13050.1
AT4G13050
Acyl-ACP thioesterase
Chr2_+_17627894 0.40 AT2G42320.4
AT2G42320.1
AT2G42320
nucleolar protein gar2-like protein
Chr1_+_10828373 0.39 AT1G30570.1
HERK2
hercules receptor kinase 2
Chr3_+_6904046 0.39 AT3G19860.3
bHLH121
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_3620064 0.39 AT3G11490.1
AT3G11490
rac GTPase activating protein
Chr2_+_17627331 0.38 AT2G42320.2
AT2G42320.3
AT2G42320
nucleolar protein gar2-like protein
Chr1_-_30310667 0.37 AT1G80630.1
AT1G80630
RNI-like superfamily protein
Chr3_-_23276630 0.37 AT3G62980.1
TIR1
F-box/RNI-like superfamily protein
Chr4_+_16498391 0.37 AT4G34530.1
AT4G34540.1
CIB1
AT4G34540
cryptochrome-interacting basic-helix-loop-helix 1
NmrA-like negative transcriptional regulator family protein
Chr3_+_19393768 0.36 AT3G52290.1
IQD3
IQ-domain 3
Chr5_-_16195751 0.36 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr2_-_15014147 0.36 AT2G35710.3
AT2G35710.4
AT2G35710.1
PGSIP7
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_3570838 0.36 AT1G10740.4
AT1G10740.3
AT1G10740.2
AT1G10740
alpha/beta-Hydrolases superfamily protein
Chr5_-_4915976 0.36 AT5G15150.1
HB-3
homeobox 3
Chr5_-_1706787 0.35 AT5G05690.2
AT5G05690.3
CPD
Cytochrome P450 superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:0015840 urea transport(GO:0015840)
0.4 1.3 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.4 3.5 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.3 3.0 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.2 4.6 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.2 1.0 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 1.4 GO:0006021 inositol biosynthetic process(GO:0006021)
0.2 1.3 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.2 0.9 GO:0046713 borate transport(GO:0046713)
0.2 0.7 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.2 0.7 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.2 4.1 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.2 0.5 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 2.4 GO:0052541 plant-type cell wall cellulose metabolic process(GO:0052541)
0.1 0.7 GO:0010255 glucose mediated signaling pathway(GO:0010255)
0.1 5.0 GO:0042335 cuticle development(GO:0042335)
0.1 2.0 GO:0009299 mRNA transcription(GO:0009299)
0.1 0.6 GO:0032410 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.5 GO:0080119 ER body organization(GO:0080119)
0.1 1.4 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.1 0.4 GO:0070206 protein trimerization(GO:0070206)
0.1 0.3 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.1 2.1 GO:0009638 phototropism(GO:0009638)
0.1 1.4 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.1 3.8 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 0.4 GO:0019419 sulfate reduction(GO:0019419)
0.1 0.8 GO:1902025 nitrate import(GO:1902025)
0.1 2.1 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.1 0.8 GO:1990937 xylan acetylation(GO:1990937)
0.1 0.3 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.5 GO:0006751 glutathione catabolic process(GO:0006751)
0.1 0.9 GO:0048766 root hair initiation(GO:0048766)
0.1 0.3 GO:0090342 regulation of cell aging(GO:0090342)
0.1 0.3 GO:0000912 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.1 0.3 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 0.5 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.1 0.9 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 0.7 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.1 1.1 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 0.9 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.1 0.9 GO:0009641 shade avoidance(GO:0009641)
0.1 0.8 GO:0007584 response to nutrient(GO:0007584)
0.0 0.2 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.1 GO:0006666 3-keto-sphinganine metabolic process(GO:0006666)
0.0 0.8 GO:0009750 response to fructose(GO:0009750)
0.0 0.6 GO:0010274 hydrotropism(GO:0010274)
0.0 0.4 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 1.3 GO:0006284 base-excision repair(GO:0006284)
0.0 0.2 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.2 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.0 1.7 GO:0016485 protein processing(GO:0016485)
0.0 1.8 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 1.2 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.2 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.0 0.9 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 2.2 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.1 GO:0009558 embryo sac cellularization(GO:0009558)
0.0 0.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.5 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.1 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.0 0.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.9 GO:0070417 cellular response to cold(GO:0070417)
0.0 0.4 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.0 0.4 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 1.7 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.2 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.7 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 1.5 GO:0009630 gravitropism(GO:0009630)
0.0 1.1 GO:0010114 response to red light(GO:0010114)
0.0 0.2 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.5 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 0.1 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.3 GO:0010152 pollen maturation(GO:0010152)
0.0 0.4 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 2.9 GO:0010015 root morphogenesis(GO:0010015)
0.0 0.2 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.7 GO:0051607 defense response to virus(GO:0051607)
0.0 2.4 GO:0046777 protein autophosphorylation(GO:0046777)
0.0 0.6 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.3 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.4 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.2 GO:0045037 protein import into chloroplast stroma(GO:0045037)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.8 GO:0016328 lateral plasma membrane(GO:0016328)
0.3 3.6 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.2 1.4 GO:0009538 photosystem I reaction center(GO:0009538)
0.1 1.1 GO:0009522 photosystem I(GO:0009522)
0.1 12.8 GO:0009505 plant-type cell wall(GO:0009505)
0.1 8.1 GO:0099503 secretory vesicle(GO:0099503)
0.1 0.5 GO:0010168 ER body(GO:0010168)
0.0 0.6 GO:0009986 cell surface(GO:0009986)
0.0 9.3 GO:0031225 anchored component of membrane(GO:0031225)
0.0 1.1 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 1.3 GO:0005875 microtubule associated complex(GO:0005875)
0.0 1.0 GO:0010287 plastoglobule(GO:0010287)
0.0 4.4 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 1.0 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.5 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.4 GO:0010319 stromule(GO:0010319)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:0015204 ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204)
0.7 2.0 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.5 1.5 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.4 1.4 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.3 0.8 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
0.3 1.3 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.2 1.9 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.2 1.0 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.2 3.5 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.2 0.9 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.2 2.2 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.2 0.5 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.1 1.1 GO:0008083 growth factor activity(GO:0008083)
0.1 1.0 GO:0010011 auxin binding(GO:0010011)
0.1 1.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 1.3 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.5 GO:0015928 fucosidase activity(GO:0015928)
0.1 2.9 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 0.4 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.1 0.5 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.1 0.5 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.1 0.9 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 0.2 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.1 0.9 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.5 GO:0080046 phosphorylase activity(GO:0004645) quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.1 0.6 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.5 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.2 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.1 0.6 GO:0008199 ferric iron binding(GO:0008199)
0.1 3.7 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 0.6 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.0 0.9 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.1 GO:0047560 3-dehydrosphinganine reductase activity(GO:0047560)
0.0 1.1 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.3 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.4 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 1.3 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 1.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 1.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.7 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 1.5 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.2 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.3 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.5 GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water(GO:0016717)
0.0 0.8 GO:0005179 hormone activity(GO:0005179)
0.0 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.4 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.2 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 0.7 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 2.8 GO:0005507 copper ion binding(GO:0005507)
0.0 0.1 GO:0003680 AT DNA binding(GO:0003680)
0.0 1.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.2 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.1 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.2 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 0.1 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.2 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.9 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.7 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.1 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 4.6 GO:0042802 identical protein binding(GO:0042802)
0.0 5.0 GO:0046983 protein dimerization activity(GO:0046983)
0.0 1.6 GO:0008017 microtubule binding(GO:0008017)
0.0 2.5 GO:0008289 lipid binding(GO:0008289)
0.0 0.0 GO:0008905 mannose-1-phosphate guanylyltransferase activity(GO:0004475) mannose-phosphate guanylyltransferase activity(GO:0008905)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 PID IL12 2PATHWAY IL12-mediated signaling events
0.1 0.3 PID ARF 3PATHWAY Arf1 pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.3 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.2 1.1 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.2 0.7 REACTOME TRANS GOLGI NETWORK VESICLE BUDDING Genes involved in trans-Golgi Network Vesicle Budding
0.2 0.5 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.1 0.5 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System