GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G08320
|
AT1G08320 | bZIP transcription factor family protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
TGA9 | arTal_v1_Chr1_-_2627880_2627928 | 0.51 | 5.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_-_9131779_9131779 Show fit | 4.27 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
arTal_v1_Chr2_-_6242541_6242541 Show fit | 4.22 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
arTal_v1_Chr4_+_6491017_6491017 Show fit | 3.71 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
arTal_v1_Chr3_+_9208861_9208941 Show fit | 3.70 |
AT3G25290.1
AT3G25290.2 |
Auxin-responsive family protein |
|
arTal_v1_Chr3_-_16923299_16923299 Show fit | 3.66 |
AT3G46080.1
|
C2H2-type zinc finger family protein |
|
arTal_v1_Chr4_-_12337599_12337599 Show fit | 3.54 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
arTal_v1_Chr3_+_5234457_5234457 Show fit | 3.48 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
arTal_v1_Chr2_+_6213972_6213972 Show fit | 3.43 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
arTal_v1_Chr3_+_19239305_19239412 Show fit | 3.40 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
arTal_v1_Chr3_-_162905_162905 Show fit | 3.40 |
AT3G01420.1
|
Peroxidase superfamily protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 29.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
0.2 | 18.8 | GO:0010150 | leaf senescence(GO:0010150) |
0.3 | 12.1 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
0.0 | 11.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.1 | 10.6 | GO:0009751 | response to salicylic acid(GO:0009751) |
0.1 | 10.2 | GO:0010200 | response to chitin(GO:0010200) |
0.3 | 7.9 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
0.1 | 6.7 | GO:0034976 | response to endoplasmic reticulum stress(GO:0034976) |
1.2 | 6.0 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
0.0 | 5.5 | GO:0006979 | response to oxidative stress(GO:0006979) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 7.5 | GO:0005801 | cis-Golgi network(GO:0005801) |
0.1 | 4.9 | GO:0000139 | Golgi membrane(GO:0000139) |
0.0 | 4.7 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 4.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
0.1 | 3.4 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.1 | 2.9 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
0.2 | 2.8 | GO:0005779 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
0.1 | 2.6 | GO:0031201 | SNARE complex(GO:0031201) |
0.1 | 2.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
0.1 | 2.5 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 36.2 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
0.0 | 23.0 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
0.1 | 9.1 | GO:0061659 | ubiquitin protein ligase activity(GO:0061630) ubiquitin-like protein ligase activity(GO:0061659) |
0.6 | 6.4 | GO:0102360 | daphnetin 3-O-glucosyltransferase activity(GO:0102360) |
0.2 | 6.2 | GO:0004364 | glutathione transferase activity(GO:0004364) |
0.3 | 5.9 | GO:1900750 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
0.8 | 5.7 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
0.0 | 5.7 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
0.1 | 5.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.0 | 5.3 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 1.4 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
0.2 | 1.4 | PID PLK1 PATHWAY | PLK1 signaling events |
0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
0.3 | 0.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 0.8 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.1 | 0.6 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 0.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 0.3 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
0.0 | 0.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.3 | 2.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
0.3 | 1.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.0 | 1.3 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
0.2 | 1.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.3 | 0.9 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.3 | 0.9 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
0.3 | 0.8 | REACTOME INWARDLY RECTIFYING K CHANNELS | Genes involved in Inwardly rectifying K+ channels |
0.2 | 0.8 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
0.1 | 0.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |